rs33444169 SNP Detail

Summary

• ID
  rs33444169
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:113877561 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGA ACTAAACCTA ACAACTAAAC
  Y
  ACAGAACTAA TCTTTGCTTA TAAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45279071	mCV22515908	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	T
ss147245741	ENSMUSSNP3026709	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
ss320462294	CHEV_2_113872816	CHEVERUD	SCREENING_POP	f	SNP						C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33444169					SNP	C	C	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:113877561 () rs orientation: forward

Symbol	Name	Function Class
Actc1	actin, alpha, cardiac muscle 1	202 bp downstream
Rr562815	regulatory region 562815	1370 bp distal
Rr562816	regulatory region 562816	within coordinates
Tssr600	transcription start site region 600	482 bp downstream
Tssr601	transcription start site region 601	492 bp downstream
Tssr19429	transcription start site region 19429	204 bp upstream
Tssr19430	transcription start site region 19430	299 bp upstream
Tssr19431	transcription start site region 19431	379 bp upstream
Tssr19432	transcription start site region 19432	475 bp upstream
Tssr19433	transcription start site region 19433	1041 bp upstream
Tssr19434	transcription start site region 19434	1094 bp upstream
Tssr25660	transcription start site region 25660	231 bp downstream
Tssr25661	transcription start site region 25661	248 bp downstream
Tssr25662	transcription start site region 25662	305 bp downstream
Tssr25663	transcription start site region 25663	368 bp downstream
Tssr25664	transcription start site region 25664	398 bp downstream
Tssr25665	transcription start site region 25665	506 bp downstream
Tssr25666	transcription start site region 25666	1073 bp downstream
Tssr25667	transcription start site region 25667	1100 bp downstream
Tssr25668	transcription start site region 25668	1136 bp downstream
Tssr25669	transcription start site region 25669	1165 bp downstream