rs33444505 SNP Detail

Summary

• ID
  rs33444505
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9302857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGCCTTG AGTGCTCTAA
  GGATGCTAAG CGAACAAGAG CATAGCAGGA ACATAAGGAG AATCTGAGCT CTCCCTTCGT
  CTAGTCCCTT CAAAATCTTC ATACAATAGC AAAATTTGTG ATCAGAACTA AAACTATGCA
  ATGCAATATG AAGTCAAAAC AAGATGAGCG CATGCGTCCT TTAGTTACAT GTGATACATA
  Y
  CAAGTAGCAA TGGAGGCCGA ATCCTAACCA CCATGAGACC CTTTGCCTCT GACACTTCCC
  TTGTGAGTGT GGTGCTTTCC TTTCTCTCCT GTTGGCTTCA CCACTTTCTC TCCATCAAGG
  CCTCTGCTCT CTACTCTTCC TTCCTCATTA CCAAAGCTGA ATAGTTATAA GTCTTTGTAT
  TCCTGGGGGG GGGGGGGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46814938	NES10969914	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33444505					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46814938	NES10969914	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9302857 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Tssr160517	transcription start site region 160517	1119 bp downstream
Tssr160518	transcription start site region 160518	617 bp downstream
Tssr160519	transcription start site region 160519	12 bp upstream
Tssr160520	transcription start site region 160520	36 bp upstream
Tssr160521	transcription start site region 160521	123 bp upstream
Tssr160522	transcription start site region 160522	254 bp upstream
Tssr162873	transcription start site region 162873	970 bp upstream
Tssr162874	transcription start site region 162874	714 bp upstream
Tssr162875	transcription start site region 162875	691 bp upstream
Tssr162876	transcription start site region 162876	535 bp upstream
Tssr162877	transcription start site region 162877	516 bp upstream
Tssr162878	transcription start site region 162878	464 bp upstream
Tssr162879	transcription start site region 162879	358 bp upstream
Tssr162880	transcription start site region 162880	272 bp upstream
Tssr162881	transcription start site region 162881	254 bp upstream
Tssr162882	transcription start site region 162882	43 bp downstream
Tssr162883	transcription start site region 162883	423 bp downstream
Tssr162884	transcription start site region 162884	465 bp downstream
Tssr162885	transcription start site region 162885	509 bp downstream
Tssr162886	transcription start site region 162886	556 bp downstream
Tssr162887	transcription start site region 162887	583 bp downstream
Tssr162888	transcription start site region 162888	636 bp downstream
Tssr162889	transcription start site region 162889	666 bp downstream
Tssr162890	transcription start site region 162890	726 bp downstream
Tssr162891	transcription start site region 162891	760 bp downstream
Tssr162892	transcription start site region 162892	813 bp downstream
Tssr162893	transcription start site region 162893	917 bp downstream
Tssr162894	transcription start site region 162894	947 bp downstream
Tssr162895	transcription start site region 162895	1007 bp downstream
Tssr162896	transcription start site region 162896	1033 bp downstream
Tssr162897	transcription start site region 162897	1060 bp downstream
Tssr162898	transcription start site region 162898	1084 bp downstream
Tssr162899	transcription start site region 162899	1230 bp downstream
Tssr162900	transcription start site region 162900	1240 bp downstream
Tssr162901	transcription start site region 162901	1271 bp downstream
Tssr162902	transcription start site region 162902	1353 bp downstream
Tssr162903	transcription start site region 162903	1414 bp downstream
Tssr162904	transcription start site region 162904	1515 bp downstream
Tssr162905	transcription start site region 162905	1599 bp downstream
Tssr162906	transcription start site region 162906	1603 bp downstream
Tssr162907	transcription start site region 162907	1676 bp downstream
Tssr162908	transcription start site region 162908	1700 bp downstream