rs33444507 SNP Detail

Summary

• ID
  rs33444507
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9302955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATCAAGTAG CAATGGAGGC CGAATCCTAA CCACCATGAG
  ACCCTTTGCC TCTGACACTT CCCTTGTGAG TGTGGTGCTT TCCTTTCTCT CCTGTTGGCT
  Y
  CACCACTTTC TCTCCATCAA GGCCTCTGCT CTCTACTCTT CCTTCCTCAT TACCAAAGCT
  GAATAGTTAT AAGTCTTTGT ATTCCTGGGG GGGGGGGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46500528	mCV22743194	ABI	CRAMUS_MOUSE	f	SNP		C						T		C
ss46814941	NES10969915	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	C		C	C	T	C	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33444507					SNP	C	C	T	T	T	C	C	T	C	C	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46814941	NES10969915	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9302955 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Tssr160517	transcription start site region 160517	1217 bp downstream
Tssr160518	transcription start site region 160518	715 bp downstream
Tssr160519	transcription start site region 160519	71 bp downstream
Tssr160520	transcription start site region 160520	7 bp downstream
Tssr160521	transcription start site region 160521	25 bp upstream
Tssr160522	transcription start site region 160522	156 bp upstream
Tssr162873	transcription start site region 162873	1068 bp upstream
Tssr162874	transcription start site region 162874	812 bp upstream
Tssr162875	transcription start site region 162875	789 bp upstream
Tssr162876	transcription start site region 162876	633 bp upstream
Tssr162877	transcription start site region 162877	614 bp upstream
Tssr162878	transcription start site region 162878	562 bp upstream
Tssr162879	transcription start site region 162879	456 bp upstream
Tssr162880	transcription start site region 162880	370 bp upstream
Tssr162881	transcription start site region 162881	352 bp upstream
Tssr162882	transcription start site region 162882	52 bp upstream
Tssr162883	transcription start site region 162883	325 bp downstream
Tssr162884	transcription start site region 162884	367 bp downstream
Tssr162885	transcription start site region 162885	411 bp downstream
Tssr162886	transcription start site region 162886	458 bp downstream
Tssr162887	transcription start site region 162887	485 bp downstream
Tssr162888	transcription start site region 162888	538 bp downstream
Tssr162889	transcription start site region 162889	568 bp downstream
Tssr162890	transcription start site region 162890	628 bp downstream
Tssr162891	transcription start site region 162891	662 bp downstream
Tssr162892	transcription start site region 162892	715 bp downstream
Tssr162893	transcription start site region 162893	819 bp downstream
Tssr162894	transcription start site region 162894	849 bp downstream
Tssr162895	transcription start site region 162895	909 bp downstream
Tssr162896	transcription start site region 162896	935 bp downstream
Tssr162897	transcription start site region 162897	962 bp downstream
Tssr162898	transcription start site region 162898	986 bp downstream
Tssr162899	transcription start site region 162899	1132 bp downstream
Tssr162900	transcription start site region 162900	1142 bp downstream
Tssr162901	transcription start site region 162901	1173 bp downstream
Tssr162902	transcription start site region 162902	1255 bp downstream
Tssr162903	transcription start site region 162903	1316 bp downstream
Tssr162904	transcription start site region 162904	1417 bp downstream
Tssr162905	transcription start site region 162905	1501 bp downstream
Tssr162906	transcription start site region 162906	1505 bp downstream
Tssr162907	transcription start site region 162907	1578 bp downstream
Tssr162908	transcription start site region 162908	1602 bp downstream