rs33444510 SNP Detail

Summary

• ID
  rs33444510
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9303122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGTGGTG CTTTCCTTTC
  TCTCCTGTTG GCTTCACCAC TTTCTCTCCA TCAAGGCCTC TGCTCTCTAC TCTTCCTTCC
  TCATTACCAA AGCTGAATAG TTATAAGTCT TTGTATTCCT GGGGGGGGGG GGGCAGTCAG
  AAATGCTTTT AGTTCCCAGA AAGAGGAGTA GTTTTCTCTT TTTTTTTTTT TTTTTCACAT
  S
  TGACTAGTCT AGCAGTCATC TAGACTCTGT CTTGCATTTC TGGATGCCCA TAAAATATCG
  GATGTGATTT TACTCTTAAC CCAGTTATTT GGGGATTACA GTTTCTAAAA TTTATATTTT
  AGGAAGATGG TGATGCTGGT ACTAGTGGTG ATGAAAATGC TGCAATTAAA AAAAAAAAAA
  CAAGTTATTG TCTATGCACA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46814944	NES10969916	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33444510					SNP	G	G	G	G	G	G	C	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46814944	NES10969916	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9303122 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Tssr160517	transcription start site region 160517	1384 bp downstream
Tssr160518	transcription start site region 160518	882 bp downstream
Tssr160519	transcription start site region 160519	238 bp downstream
Tssr160520	transcription start site region 160520	174 bp downstream
Tssr160521	transcription start site region 160521	120 bp downstream
Tssr160522	transcription start site region 160522	3 bp downstream
Tssr162873	transcription start site region 162873	1235 bp upstream
Tssr162874	transcription start site region 162874	979 bp upstream
Tssr162875	transcription start site region 162875	956 bp upstream
Tssr162876	transcription start site region 162876	800 bp upstream
Tssr162877	transcription start site region 162877	781 bp upstream
Tssr162878	transcription start site region 162878	729 bp upstream
Tssr162879	transcription start site region 162879	623 bp upstream
Tssr162880	transcription start site region 162880	537 bp upstream
Tssr162881	transcription start site region 162881	519 bp upstream
Tssr162882	transcription start site region 162882	219 bp upstream
Tssr162883	transcription start site region 162883	158 bp downstream
Tssr162884	transcription start site region 162884	200 bp downstream
Tssr162885	transcription start site region 162885	244 bp downstream
Tssr162886	transcription start site region 162886	291 bp downstream
Tssr162887	transcription start site region 162887	318 bp downstream
Tssr162888	transcription start site region 162888	371 bp downstream
Tssr162889	transcription start site region 162889	401 bp downstream
Tssr162890	transcription start site region 162890	461 bp downstream
Tssr162891	transcription start site region 162891	495 bp downstream
Tssr162892	transcription start site region 162892	548 bp downstream
Tssr162893	transcription start site region 162893	652 bp downstream
Tssr162894	transcription start site region 162894	682 bp downstream
Tssr162895	transcription start site region 162895	742 bp downstream
Tssr162896	transcription start site region 162896	768 bp downstream
Tssr162897	transcription start site region 162897	795 bp downstream
Tssr162898	transcription start site region 162898	819 bp downstream
Tssr162899	transcription start site region 162899	965 bp downstream
Tssr162900	transcription start site region 162900	975 bp downstream
Tssr162901	transcription start site region 162901	1006 bp downstream
Tssr162902	transcription start site region 162902	1088 bp downstream
Tssr162903	transcription start site region 162903	1149 bp downstream
Tssr162904	transcription start site region 162904	1250 bp downstream
Tssr162905	transcription start site region 162905	1334 bp downstream
Tssr162906	transcription start site region 162906	1338 bp downstream
Tssr162907	transcription start site region 162907	1411 bp downstream
Tssr162908	transcription start site region 162908	1435 bp downstream