rs33444512 SNP Detail

Summary

• ID
  rs33444512
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9303159 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTTCTCT CCATCAAGGC
  CTCTGCTCTC TACTCTTCCT TCCTCATTAC CAAAGCTGAA TAGTTATAAG TCTTTGTATT
  CCTGGGGGGG GGGGGGCAGT CAGAAATGCT TTTAGTTCCC AGAAAGAGGA GTAGTTTTCT
  CTTTTTTTTT TTTTTTTTCA CATGTGACTA GTCTAGCAGT CATCTAGACT CTGTCTTGCA
  Y
  TTCTGGATGC CCATAAAATA TCGGATGTGA TTTTACTCTT AACCCAGTTA TTTGGGGATT
  ACAGTTTCTA AAATTTATAT TTTAGGAAGA TGGTGATGCT GGTACTAGTG GTGATGAAAA
  TGCTGCAATT AAAAAAAAAA AAACAAGTTA TTGTCTATGC ACATAAGATC TATTTGTATA
  GGTATTTAAG CCAAAGAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46814947	NES10969917	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33444512					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46814947	NES10969917	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9303159 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Tssr160517	transcription start site region 160517	1421 bp downstream
Tssr160518	transcription start site region 160518	919 bp downstream
Tssr160519	transcription start site region 160519	275 bp downstream
Tssr160520	transcription start site region 160520	211 bp downstream
Tssr160521	transcription start site region 160521	157 bp downstream
Tssr160522	transcription start site region 160522	40 bp downstream
Tssr162873	transcription start site region 162873	1272 bp upstream
Tssr162874	transcription start site region 162874	1016 bp upstream
Tssr162875	transcription start site region 162875	993 bp upstream
Tssr162876	transcription start site region 162876	837 bp upstream
Tssr162877	transcription start site region 162877	818 bp upstream
Tssr162878	transcription start site region 162878	766 bp upstream
Tssr162879	transcription start site region 162879	660 bp upstream
Tssr162880	transcription start site region 162880	574 bp upstream
Tssr162881	transcription start site region 162881	556 bp upstream
Tssr162882	transcription start site region 162882	256 bp upstream
Tssr162883	transcription start site region 162883	121 bp downstream
Tssr162884	transcription start site region 162884	163 bp downstream
Tssr162885	transcription start site region 162885	207 bp downstream
Tssr162886	transcription start site region 162886	254 bp downstream
Tssr162887	transcription start site region 162887	281 bp downstream
Tssr162888	transcription start site region 162888	334 bp downstream
Tssr162889	transcription start site region 162889	364 bp downstream
Tssr162890	transcription start site region 162890	424 bp downstream
Tssr162891	transcription start site region 162891	458 bp downstream
Tssr162892	transcription start site region 162892	511 bp downstream
Tssr162893	transcription start site region 162893	615 bp downstream
Tssr162894	transcription start site region 162894	645 bp downstream
Tssr162895	transcription start site region 162895	705 bp downstream
Tssr162896	transcription start site region 162896	731 bp downstream
Tssr162897	transcription start site region 162897	758 bp downstream
Tssr162898	transcription start site region 162898	782 bp downstream
Tssr162899	transcription start site region 162899	928 bp downstream
Tssr162900	transcription start site region 162900	938 bp downstream
Tssr162901	transcription start site region 162901	969 bp downstream
Tssr162902	transcription start site region 162902	1051 bp downstream
Tssr162903	transcription start site region 162903	1112 bp downstream
Tssr162904	transcription start site region 162904	1213 bp downstream
Tssr162905	transcription start site region 162905	1297 bp downstream
Tssr162906	transcription start site region 162906	1301 bp downstream
Tssr162907	transcription start site region 162907	1374 bp downstream
Tssr162908	transcription start site region 162908	1398 bp downstream