rs33445484 SNP Detail

Summary

• ID
  rs33445484
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9303264 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTTTTAG TTCCCAGAAA
  GAGGAGTAGT TTTCTCTTTT TTTTTTTTTT TTTCACATGT GACTAGTCTA GCAGTCATCT
  AGACTCTGTC TTGCATTTCT GGATGCCCAT AAAATATCGG ATGTGATTTT ACTCTTAACC
  CAGTTATTTG GGGATTACAG TTTCTAAAAT TTATATTTTA GGAAGATGGT GATGCTGGTA
  M
  TAGTGGTGAT GAAAATGCTG CAATTAAAAA AAAAAAAACA AGTTATTGTC TATGCACATA
  AGATCTATTT GTATAGGTAT TTAAGCCAAA GAAGAAATGG ATTCTAAGCA GGATATGTAT
  TATCATGTAT ACATTTCTTA GAATTCAGTT CAAAGTTTGG CTGGAGCAGA TCATTTCTGT
  CAGTAAATAA ATGTGTTCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46814950	NES10969918	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33445484					SNP	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46814950	NES10969918	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9303264 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Tssr160517	transcription start site region 160517	1526 bp downstream
Tssr160518	transcription start site region 160518	1024 bp downstream
Tssr160519	transcription start site region 160519	380 bp downstream
Tssr160520	transcription start site region 160520	316 bp downstream
Tssr160521	transcription start site region 160521	262 bp downstream
Tssr160522	transcription start site region 160522	145 bp downstream
Tssr162873	transcription start site region 162873	1377 bp upstream
Tssr162874	transcription start site region 162874	1121 bp upstream
Tssr162875	transcription start site region 162875	1098 bp upstream
Tssr162876	transcription start site region 162876	942 bp upstream
Tssr162877	transcription start site region 162877	923 bp upstream
Tssr162878	transcription start site region 162878	871 bp upstream
Tssr162879	transcription start site region 162879	765 bp upstream
Tssr162880	transcription start site region 162880	679 bp upstream
Tssr162881	transcription start site region 162881	661 bp upstream
Tssr162882	transcription start site region 162882	361 bp upstream
Tssr162883	transcription start site region 162883	16 bp downstream
Tssr162884	transcription start site region 162884	58 bp downstream
Tssr162885	transcription start site region 162885	102 bp downstream
Tssr162886	transcription start site region 162886	149 bp downstream
Tssr162887	transcription start site region 162887	176 bp downstream
Tssr162888	transcription start site region 162888	229 bp downstream
Tssr162889	transcription start site region 162889	259 bp downstream
Tssr162890	transcription start site region 162890	319 bp downstream
Tssr162891	transcription start site region 162891	353 bp downstream
Tssr162892	transcription start site region 162892	406 bp downstream
Tssr162893	transcription start site region 162893	510 bp downstream
Tssr162894	transcription start site region 162894	540 bp downstream
Tssr162895	transcription start site region 162895	600 bp downstream
Tssr162896	transcription start site region 162896	626 bp downstream
Tssr162897	transcription start site region 162897	653 bp downstream
Tssr162898	transcription start site region 162898	677 bp downstream
Tssr162899	transcription start site region 162899	823 bp downstream
Tssr162900	transcription start site region 162900	833 bp downstream
Tssr162901	transcription start site region 162901	864 bp downstream
Tssr162902	transcription start site region 162902	946 bp downstream
Tssr162903	transcription start site region 162903	1007 bp downstream
Tssr162904	transcription start site region 162904	1108 bp downstream
Tssr162905	transcription start site region 162905	1192 bp downstream
Tssr162906	transcription start site region 162906	1196 bp downstream
Tssr162907	transcription start site region 162907	1269 bp downstream
Tssr162908	transcription start site region 162908	1293 bp downstream