rs33445489 SNP Detail

Summary

• ID
  rs33445489
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9303578 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTATTAT CATGTATACA
  TTTCTTAGAA TTCAGTTCAA AGTTTGGCTG GAGCAGATCA TTTCTGTCAG TAAATAAATG
  TGTTCTTCTT TTTCAGCTTA CAGACTGGAA CTAGAAGTGT TAGCCACCAT CATCATAGGA
  GAATAGGTCT CTGAATTCAT GCCTCCTCCC TTCAAATGAC AGTTGGATGA ATACCAGTAG
  R
  ATGGCCTGAC TCTCCCTATT GGTTCATATC TTTCTCTCTA CTCCCAGGGG AATCAGGATA
  CTTTGGTGTG TAAAAGAAAC AGAAGGGTAA TTCTGTCTCT GGCCATACAT TCCATTATGA
  TATAGTTCTG AATGTTTGCA TCTATTTGTT CAATCATTCA TTCATTCATT CAATAAACTG
  ACCTTGAACA CCAATTCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46814956	NES10969920	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33445489					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46814956	NES10969920	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9303578 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Tssr160517	transcription start site region 160517	1840 bp downstream
Tssr160518	transcription start site region 160518	1338 bp downstream
Tssr160519	transcription start site region 160519	694 bp downstream
Tssr160520	transcription start site region 160520	630 bp downstream
Tssr160521	transcription start site region 160521	576 bp downstream
Tssr160522	transcription start site region 160522	459 bp downstream
Tssr162873	transcription start site region 162873	1691 bp upstream
Tssr162874	transcription start site region 162874	1435 bp upstream
Tssr162875	transcription start site region 162875	1412 bp upstream
Tssr162876	transcription start site region 162876	1256 bp upstream
Tssr162877	transcription start site region 162877	1237 bp upstream
Tssr162878	transcription start site region 162878	1185 bp upstream
Tssr162879	transcription start site region 162879	1079 bp upstream
Tssr162880	transcription start site region 162880	993 bp upstream
Tssr162881	transcription start site region 162881	975 bp upstream
Tssr162882	transcription start site region 162882	675 bp upstream
Tssr162883	transcription start site region 162883	285 bp upstream
Tssr162884	transcription start site region 162884	220 bp upstream
Tssr162885	transcription start site region 162885	184 bp upstream
Tssr162886	transcription start site region 162886	164 bp upstream
Tssr162887	transcription start site region 162887	126 bp upstream
Tssr162888	transcription start site region 162888	72 bp upstream
Tssr162889	transcription start site region 162889	54 bp upstream
Tssr162890	transcription start site region 162890	5 bp downstream
Tssr162891	transcription start site region 162891	39 bp downstream
Tssr162892	transcription start site region 162892	92 bp downstream
Tssr162893	transcription start site region 162893	196 bp downstream
Tssr162894	transcription start site region 162894	226 bp downstream
Tssr162895	transcription start site region 162895	286 bp downstream
Tssr162896	transcription start site region 162896	312 bp downstream
Tssr162897	transcription start site region 162897	339 bp downstream
Tssr162898	transcription start site region 162898	363 bp downstream
Tssr162899	transcription start site region 162899	509 bp downstream
Tssr162900	transcription start site region 162900	519 bp downstream
Tssr162901	transcription start site region 162901	550 bp downstream
Tssr162902	transcription start site region 162902	632 bp downstream
Tssr162903	transcription start site region 162903	693 bp downstream
Tssr162904	transcription start site region 162904	794 bp downstream
Tssr162905	transcription start site region 162905	878 bp downstream
Tssr162906	transcription start site region 162906	882 bp downstream
Tssr162907	transcription start site region 162907	955 bp downstream
Tssr162908	transcription start site region 162908	979 bp downstream