rs33445492 SNP Detail

Summary

• ID
  rs33445492
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9303674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACAGACT GGAACTAGAA
  GTGTTAGCCA CCATCATCAT AGGAGAATAG GTCTCTGAAT TCATGCCTCC TCCCTTCAAA
  TGACAGTTGG ATGAATACCA GTAGAATGGC CTGACTCTCC CTATTGGTTC ATATCTTTCT
  CTCTACTCCC AGGGGAATCA GGATACTTTG GTGTGTAAAA GAAACAGAAG GGTAATTCTG
  Y
  CTCTGGCCAT ACATTCCATT ATGATATAGT TCTGAATGTT TGCATCTATT TGTTCAATCA
  TTCATTCATT CATTCAATAA ACTGACCTTG AACACCAATT CTGCCAAACA CCATGGTAAA
  TGTAGAGTGC TACTTTAACT CCAATCAGTC TAATATTTCT TACTAGGAAT AATCTCTGAC
  CCAGTTAAAC TGTTGTGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46814959	NES10969921	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33445492					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46814959	NES10969921	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9303674 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Tssr160517	transcription start site region 160517	1936 bp downstream
Tssr160518	transcription start site region 160518	1434 bp downstream
Tssr160519	transcription start site region 160519	790 bp downstream
Tssr160520	transcription start site region 160520	726 bp downstream
Tssr160521	transcription start site region 160521	672 bp downstream
Tssr160522	transcription start site region 160522	555 bp downstream
Tssr162873	transcription start site region 162873	1787 bp upstream
Tssr162874	transcription start site region 162874	1531 bp upstream
Tssr162875	transcription start site region 162875	1508 bp upstream
Tssr162876	transcription start site region 162876	1352 bp upstream
Tssr162877	transcription start site region 162877	1333 bp upstream
Tssr162878	transcription start site region 162878	1281 bp upstream
Tssr162879	transcription start site region 162879	1175 bp upstream
Tssr162880	transcription start site region 162880	1089 bp upstream
Tssr162881	transcription start site region 162881	1071 bp upstream
Tssr162882	transcription start site region 162882	771 bp upstream
Tssr162883	transcription start site region 162883	381 bp upstream
Tssr162884	transcription start site region 162884	316 bp upstream
Tssr162885	transcription start site region 162885	280 bp upstream
Tssr162886	transcription start site region 162886	260 bp upstream
Tssr162887	transcription start site region 162887	222 bp upstream
Tssr162888	transcription start site region 162888	168 bp upstream
Tssr162889	transcription start site region 162889	150 bp upstream
Tssr162890	transcription start site region 162890	80 bp upstream
Tssr162891	transcription start site region 162891	52 bp upstream
Tssr162892	transcription start site region 162892	within coordinates
Tssr162893	transcription start site region 162893	100 bp downstream
Tssr162894	transcription start site region 162894	130 bp downstream
Tssr162895	transcription start site region 162895	190 bp downstream
Tssr162896	transcription start site region 162896	216 bp downstream
Tssr162897	transcription start site region 162897	243 bp downstream
Tssr162898	transcription start site region 162898	267 bp downstream
Tssr162899	transcription start site region 162899	413 bp downstream
Tssr162900	transcription start site region 162900	423 bp downstream
Tssr162901	transcription start site region 162901	454 bp downstream
Tssr162902	transcription start site region 162902	536 bp downstream
Tssr162903	transcription start site region 162903	597 bp downstream
Tssr162904	transcription start site region 162904	698 bp downstream
Tssr162905	transcription start site region 162905	782 bp downstream
Tssr162906	transcription start site region 162906	786 bp downstream
Tssr162907	transcription start site region 162907	859 bp downstream
Tssr162908	transcription start site region 162908	883 bp downstream