rs33445607 SNP Detail

Summary

• ID
  rs33445607
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:120087407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACAAGGCC TGGGATGAAC
  CATCCCTGGT GGTTCTAGCT ATGTCCTGTG CAGTTGCGAC CTTGGGGTCA CTACTTGTCC
  AGTGTCATGT TCATTGTTGA CTAGTTTTCT CAGACTGACC AGCTAGCTTA GAATAAAGAC
  AATGTTGCAG CGTCTTCCAA GAAATCCTCA TATTTTTCTG TATCTCTGCA AGGTGCTCAG
  K
  TATTGGCAAA CATGATAATC TGATTATTAA AGTCATTTCT GACCAGGCAC TTGGCTCGAT
  GGTAGTAATC CGCACAGGGA GTCTATGCGG TGTGTGGTAG AGACGCTCTG TTCTGTTGTG
  TGTTCATCTG TGTTCTTCTC ATTCTTTGCC AGTTGAGACC ATAGATCTAG GTAGAGATAG
  TGAGGCTGGC ATGCCCAGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss47799527	NES11999999	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33445607					SNP	T	T	T	T	T	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47799527	NES11999999	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:120087407 () rs orientation: forward

Symbol	Name	Function Class
Gm38642	predicted gene, 38642	1295 bp downstream
Gm47059	predicted gene, 47059	within coordinates
Rr207892	regulatory region 207892	995 bp proximal