rs33445609 SNP Detail

Summary

• ID
  rs33445609
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:120087430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTGGTGGT TCTAGCTATG
  TCCTGTGCAG TTGCGACCTT GGGGTCACTA CTTGTCCAGT GTCATGTTCA TTGTTGACTA
  GTTTTCTCAG ACTGACCAGC TAGCTTAGAA TAAAGACAAT GTTGCAGCGT CTTCCAAGAA
  ATCCTCATAT TTTTCTGTAT CTCTGCAAGG TGCTCAGTTA TTGGCAAACA TGATAATCTG
  W
  TTATTAAAGT CATTTCTGAC CAGGCACTTG GCTCGATGGT AGTAATCCGC ACAGGGAGTC
  TATGCGGTGT GTGGTAGAGA CGCTCTGTTC TGTTGTGTGT TCATCTGTGT TCTTCTCATT
  CTTTGCCAGT TGAGACCATA GATCTAGGTA GAGATAGTGA GGCTGGCATG CCCAGCCAAT
  CACCATGCTG GTAGCTCAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss47799529	NES12000000	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs33445609					SNP	A	A	A	A	A	A	T	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47799529	NES12000000	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:120087430 () rs orientation: forward

Symbol	Name	Function Class
Gm38642	predicted gene, 38642	1318 bp downstream
Gm47059	predicted gene, 47059	within coordinates
Rr207892	regulatory region 207892	972 bp proximal