rs33445636 SNP Detail

Summary

• ID
  rs33445636
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:34152223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCTGCTGC TTTATTAAAG AGGACCTTGA TGCCACCCAG
  GAATGGCCTA AGGGAGAACG GCAGAGGGCG CCCCACGACA GGAAGGAGGA ACAGGGCTAA
  M
  CAGGGCCATG GATTGTCCTG CTGTCTGCGC AACTCCTAGG GTAGTATCTT TAAGTCTCCA
  AGACCCTGGG CTCCAGTCTT GGCCCCTTCA CGCTTTCAG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45780187	mCV25133973	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A	C
ss148215555	ENSMUSSNP6378152	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33445636					SNP	A	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:34152223 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15746	CpG island 15746	495 bp proximal
Gm42847	predicted gene 42847	1817 bp upstream
Nat8l	N-acetyltransferase 8-like	1105 bp upstream
Rr609648	regulatory region 609648	26 bp distal
Rr609649	regulatory region 609649	615 bp proximal
Tssr1458	transcription start site region 1458	1904 bp upstream
Tssr45846	transcription start site region 45846	1130 bp upstream
Tssr45847	transcription start site region 45847	1169 bp upstream
Tssr45848	transcription start site region 45848	1215 bp upstream
Tssr45849	transcription start site region 45849	1240 bp upstream
Tssr45850	transcription start site region 45850	1531 bp upstream
Tssr45851	transcription start site region 45851	1706 bp upstream
Tssr45852	transcription start site region 45852	1730 bp upstream
Tssr45853	transcription start site region 45853	1760 bp upstream
Tssr45854	transcription start site region 45854	1819 bp upstream
Tssr45855	transcription start site region 45855	1852 bp upstream
Tssr45856	transcription start site region 45856	1869 bp upstream
Tssr45857	transcription start site region 45857	1891 bp upstream
Tssr50625	transcription start site region 50625	1657 bp downstream