rs33445846 SNP Detail

Summary

• ID
  rs33445846
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:74365151 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGCC AAGATAAACT ATTAAACTCA
  M
  AAAATCTATA CCCAAATACA TATTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45780088	mCV23411019	ABI	CRAMUS_MOUSE	f	SNP	A	A	A					C
ss61181223	NES16695084	PERLEGEN	MM_PANEL2	f	SNP	C			C	C	C	A		A	A	A	C		C	C	C	C		C
ss148664178	ENSMUSSNP1363909	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss321569515	CHEV_5_74600515	CHEVERUD	SCREENING_POP	f	SNP													A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33445846					SNP	?	A	A	C	C	C	A	C	A	A	A	C	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61181223	NES16695084	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:74365151 () rs orientation: forward

Symbol	Name	Function Class
Rr613252	regulatory region 613252	1891 bp distal
Rr613253	regulatory region 613253	1068 bp proximal
Scfd2	Sec1 family domain containing 2	326 bp downstream