rs33446089 SNP Detail

Summary

• ID
  rs33446089
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:3766694 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGCATCA TGATACAGTC
  CTCATGTCCT CTGGAATCAT TGGGCTCTCC AGAGTTCCAG TGGCTGTGGT AGTTCAGTGG
  GAGTGTTACT GGGACTGAGG ATAGACCTAG GGTCAAGCTT CCTTTCCCAG GCCTTGCTTG
  TTTGCTTGGC TCTGCTCTAG ACATTCTGAA TGCCTACATT GAGTTTATAT CTGCAGTGTA
  Y
  ATTTGTACGG ACCCAGAATT TAACCCTTAG TTAATTCCCA GGGTCTAGCA TATCCATTCT
  TTAAATGTTA TTTCAGGGGC TGAGGATATT TCTCAGTGGA AAAGAATGCT TGTTATAATG
  CTTTGTTGTA CAAAGACCTG AGTTCAAATC CCAAGTAGTC ACATAAAAAG CTCTGTATGG
  TTGTGCAAGT GTTTATAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46277491	mCV22849348	ABI	CRAMUS_MOUSE	f	SNP	C	T						T
ss61076274	NES16052995	PERLEGEN	MM_PANEL2	f	SNP		T	T	T	T	T	C	T	T	T	T	T	T	T
ss148548704	ENSMUSSNP2397685	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T						T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33446089					SNP	C	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61076274	NES16052995	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:3766694 () rs orientation: forward

Symbol	Name	Function Class
Clec4g	C-type lectin domain family 4, member g	within coordinates
Cpgi20034	CpG island 20034	1931 bp proximal
Gm16553	predicted gene 16553	within coordinates
Rr400747	regulatory region 400747	1875 bp upstream
Rr658970	regulatory region 658970	1905 bp proximal
Tssr80223	transcription start site region 80223	853 bp downstream
Tssr80224	transcription start site region 80224	868 bp downstream