rs33446090 SNP Detail

Summary

• ID
  rs33446090
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124747058 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAC TGTCCCAAAA CACACGAACC
  W
  AATTTATTTA TTACTGATGG CAAAT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46277492	mCV23471513	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	A
ss322855962	CHEV_8_126544219	CHEVERUD	SCREENING_POP	f	SNP					A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33446090					SNP	A	T	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124747058 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21265	CpG island 21265	148 bp proximal
Rr672602	regulatory region 672602	within coordinates
Rr672603	regulatory region 672603	502 bp proximal
Rr672604	regulatory region 672604	659 bp proximal
Rr672605	regulatory region 672605	679 bp proximal
Taf5l	TATA-box binding protein associated factor 5 like	within coordinates
Tssr80012	transcription start site region 80012	836 bp upstream
Tssr80013	transcription start site region 80013	1133 bp upstream
Tssr80014	transcription start site region 80014	1200 bp upstream
Tssr80015	transcription start site region 80015	1249 bp upstream
Tssr83422	transcription start site region 83422	615 bp downstream
Tssr83423	transcription start site region 83423	724 bp downstream
Tssr83424	transcription start site region 83424	1040 bp downstream
Urb2	URB2 ribosome biogenesis 2 homolog (S. cerevisiae)	1189 bp upstream