rs33446245 SNP Detail

Summary

• ID
  rs33446245
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9303790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCTATTG GTTCATATCT
  TTCTCTCTAC TCCCAGGGGA ATCAGGATAC TTTGGTGTGT AAAAGAAACA GAAGGGTAAT
  TCTGTCTCTG GCCATACATT CCATTATGAT ATAGTTCTGA ATGTTTGCAT CTATTTGTTC
  AATCATTCAT TCATTCATTC AATAAACTGA CCTTGAACAC CAATTCTGCC AAACACCATG
  R
  TAAATGTAGA GTGCTACTTT AACTCCAATC AGTCTAATAT TTCTTACTAG GAATAATCTC
  TGACCCAGTT AAACTGTTGT GCTGATAAAA CTGGAATATA CTTCTGTGCC GATACTGTCA
  TTTAGGAAGT ATTAAGTCAC CATCAGCATC ACTATCTCCT CTATTTAAAA AGTTTCCTTT
  AGCATGATGC TAAGGTTAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46814962	NES10969922	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33446245					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46814962	NES10969922	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9303790 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Tssr160518	transcription start site region 160518	1550 bp downstream
Tssr160519	transcription start site region 160519	906 bp downstream
Tssr160520	transcription start site region 160520	842 bp downstream
Tssr160521	transcription start site region 160521	788 bp downstream
Tssr160522	transcription start site region 160522	671 bp downstream
Tssr162873	transcription start site region 162873	1903 bp upstream
Tssr162874	transcription start site region 162874	1647 bp upstream
Tssr162875	transcription start site region 162875	1624 bp upstream
Tssr162876	transcription start site region 162876	1468 bp upstream
Tssr162877	transcription start site region 162877	1449 bp upstream
Tssr162878	transcription start site region 162878	1397 bp upstream
Tssr162879	transcription start site region 162879	1291 bp upstream
Tssr162880	transcription start site region 162880	1205 bp upstream
Tssr162881	transcription start site region 162881	1187 bp upstream
Tssr162882	transcription start site region 162882	887 bp upstream
Tssr162883	transcription start site region 162883	497 bp upstream
Tssr162884	transcription start site region 162884	432 bp upstream
Tssr162885	transcription start site region 162885	396 bp upstream
Tssr162886	transcription start site region 162886	376 bp upstream
Tssr162887	transcription start site region 162887	338 bp upstream
Tssr162888	transcription start site region 162888	284 bp upstream
Tssr162889	transcription start site region 162889	266 bp upstream
Tssr162890	transcription start site region 162890	196 bp upstream
Tssr162891	transcription start site region 162891	168 bp upstream
Tssr162892	transcription start site region 162892	113 bp upstream
Tssr162893	transcription start site region 162893	8 bp upstream
Tssr162894	transcription start site region 162894	14 bp downstream
Tssr162895	transcription start site region 162895	74 bp downstream
Tssr162896	transcription start site region 162896	100 bp downstream
Tssr162897	transcription start site region 162897	127 bp downstream
Tssr162898	transcription start site region 162898	151 bp downstream
Tssr162899	transcription start site region 162899	297 bp downstream
Tssr162900	transcription start site region 162900	307 bp downstream
Tssr162901	transcription start site region 162901	338 bp downstream
Tssr162902	transcription start site region 162902	420 bp downstream
Tssr162903	transcription start site region 162903	481 bp downstream
Tssr162904	transcription start site region 162904	582 bp downstream
Tssr162905	transcription start site region 162905	666 bp downstream
Tssr162906	transcription start site region 162906	670 bp downstream
Tssr162907	transcription start site region 162907	743 bp downstream
Tssr162908	transcription start site region 162908	767 bp downstream