rs33446247 SNP Detail

Summary

• ID
  rs33446247
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9304071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGATAAAA CTGGAATATA
  CTTCTGTGCC GATACTGTCA TTTAGGAAGT ATTAAGTCAC CATCAGCATC ACTATCTCCT
  CTATTTAAAA AGTTTCCTTT AGCATGATGC TAAGGTTAAA GAGAAAACAA CAGCTAAGAA
  TGATGAGCTC TTCTTTGACT TGCTTTTTTG TTGGTGGATA GTATAAAAAC TGAGGCTTGA
  R
  ACAACCTGGT ATTAAAGGTG AAAAGGTGAC CACACCCAGA GTCAGATGGC TTAGGTGTGG
  TTTCAACTTC TGAATTGGAA GGAAGGTGTG GAACTCATTT GAGATCCTAT TGTTTATCCT
  AGAGAGAGTC CCAGAAAATG CTTTTGCCTT ACCCTCTTCT GGCATGTCAA AGGGAAATGT
  GAAACAATGC ATAACTATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46814965	NES10969923	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33446247					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46814965	NES10969923	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9304071 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Tssr160518	transcription start site region 160518	1831 bp downstream
Tssr160519	transcription start site region 160519	1187 bp downstream
Tssr160520	transcription start site region 160520	1123 bp downstream
Tssr160521	transcription start site region 160521	1069 bp downstream
Tssr160522	transcription start site region 160522	952 bp downstream
Tssr162874	transcription start site region 162874	1928 bp upstream
Tssr162875	transcription start site region 162875	1905 bp upstream
Tssr162876	transcription start site region 162876	1749 bp upstream
Tssr162877	transcription start site region 162877	1730 bp upstream
Tssr162878	transcription start site region 162878	1678 bp upstream
Tssr162879	transcription start site region 162879	1572 bp upstream
Tssr162880	transcription start site region 162880	1486 bp upstream
Tssr162881	transcription start site region 162881	1468 bp upstream
Tssr162882	transcription start site region 162882	1168 bp upstream
Tssr162883	transcription start site region 162883	778 bp upstream
Tssr162884	transcription start site region 162884	713 bp upstream
Tssr162885	transcription start site region 162885	677 bp upstream
Tssr162886	transcription start site region 162886	657 bp upstream
Tssr162887	transcription start site region 162887	619 bp upstream
Tssr162888	transcription start site region 162888	565 bp upstream
Tssr162889	transcription start site region 162889	547 bp upstream
Tssr162890	transcription start site region 162890	477 bp upstream
Tssr162891	transcription start site region 162891	449 bp upstream
Tssr162892	transcription start site region 162892	394 bp upstream
Tssr162893	transcription start site region 162893	289 bp upstream
Tssr162894	transcription start site region 162894	253 bp upstream
Tssr162895	transcription start site region 162895	197 bp upstream
Tssr162896	transcription start site region 162896	170 bp upstream
Tssr162897	transcription start site region 162897	139 bp upstream
Tssr162898	transcription start site region 162898	119 bp upstream
Tssr162899	transcription start site region 162899	16 bp downstream
Tssr162900	transcription start site region 162900	26 bp downstream
Tssr162901	transcription start site region 162901	57 bp downstream
Tssr162902	transcription start site region 162902	139 bp downstream
Tssr162903	transcription start site region 162903	200 bp downstream
Tssr162904	transcription start site region 162904	301 bp downstream
Tssr162905	transcription start site region 162905	385 bp downstream
Tssr162906	transcription start site region 162906	389 bp downstream
Tssr162907	transcription start site region 162907	462 bp downstream
Tssr162908	transcription start site region 162908	486 bp downstream