rs33446250 SNP Detail

Summary

• ID
  rs33446250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9304160 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTTCCTT TAGCATGATG
  CTAAGGTTAA AGAGAAAACA ACAGCTAAGA ATGATGAGCT CTTCTTTGAC TTGCTTTTTT
  GTTGGTGGAT AGTATAAAAA CTGAGGCTTG AGACAACCTG GTATTAAAGG TGAAAAGGTG
  ACCACACCCA GAGTCAGATG GCTTAGGTGT GGTTTCAACT TCTGAATTGG AAGGAAGGTG
  Y
  GGAACTCATT TGAGATCCTA TTGTTTATCC TAGAGAGAGT CCCAGAAAAT GCTTTTGCCT
  TACCCTCTTC TGGCATGTCA AAGGGAAATG TGAAACAATG CATAACTATG TATGTAAAAA
  GTGCTCTGAA ACCATGAAGT TCCATGCAAT ATGACAGATG ACTAGTAAGG ATCTTTGGAA
  TTCCTTTTAG GGGGCCTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46814968	NES10969924	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33446250					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46814968	NES10969924	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9304160 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Tssr160518	transcription start site region 160518	1920 bp downstream
Tssr160519	transcription start site region 160519	1276 bp downstream
Tssr160520	transcription start site region 160520	1212 bp downstream
Tssr160521	transcription start site region 160521	1158 bp downstream
Tssr160522	transcription start site region 160522	1041 bp downstream
Tssr162875	transcription start site region 162875	1994 bp upstream
Tssr162876	transcription start site region 162876	1838 bp upstream
Tssr162877	transcription start site region 162877	1819 bp upstream
Tssr162878	transcription start site region 162878	1767 bp upstream
Tssr162879	transcription start site region 162879	1661 bp upstream
Tssr162880	transcription start site region 162880	1575 bp upstream
Tssr162881	transcription start site region 162881	1557 bp upstream
Tssr162882	transcription start site region 162882	1257 bp upstream
Tssr162883	transcription start site region 162883	867 bp upstream
Tssr162884	transcription start site region 162884	802 bp upstream
Tssr162885	transcription start site region 162885	766 bp upstream
Tssr162886	transcription start site region 162886	746 bp upstream
Tssr162887	transcription start site region 162887	708 bp upstream
Tssr162888	transcription start site region 162888	654 bp upstream
Tssr162889	transcription start site region 162889	636 bp upstream
Tssr162890	transcription start site region 162890	566 bp upstream
Tssr162891	transcription start site region 162891	538 bp upstream
Tssr162892	transcription start site region 162892	483 bp upstream
Tssr162893	transcription start site region 162893	378 bp upstream
Tssr162894	transcription start site region 162894	342 bp upstream
Tssr162895	transcription start site region 162895	286 bp upstream
Tssr162896	transcription start site region 162896	259 bp upstream
Tssr162897	transcription start site region 162897	228 bp upstream
Tssr162898	transcription start site region 162898	208 bp upstream
Tssr162899	transcription start site region 162899	68 bp upstream
Tssr162900	transcription start site region 162900	50 bp upstream
Tssr162901	transcription start site region 162901	21 bp upstream
Tssr162902	transcription start site region 162902	50 bp downstream
Tssr162903	transcription start site region 162903	111 bp downstream
Tssr162904	transcription start site region 162904	212 bp downstream
Tssr162905	transcription start site region 162905	296 bp downstream
Tssr162906	transcription start site region 162906	300 bp downstream
Tssr162907	transcription start site region 162907	373 bp downstream
Tssr162908	transcription start site region 162908	397 bp downstream