rs33446252 SNP Detail

Summary

• ID
  rs33446252
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9304241 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGTGGATA GTATAAAAAC
  TGAGGCTTGA GACAACCTGG TATTAAAGGT GAAAAGGTGA CCACACCCAG AGTCAGATGG
  CTTAGGTGTG GTTTCAACTT CTGAATTGGA AGGAAGGTGT GGAACTCATT TGAGATCCTA
  TTGTTTATCC TAGAGAGAGT CCCAGAAAAT GCTTTTGCCT TACCCTCTTC TGGCATGTCA
  R
  AGGGAAATGT GAAACAATGC ATAACTATGT ATGTAAAAAG TGCTCTGAAA CCATGAAGTT
  CCATGCAATA TGACAGATGA CTAGTAAGGA TCTTTGGAAT TCCTTTTAGG GGGCCTGTGT
  CATTGTGATT TCCTTTCCTC CTTCTCTCCT ACAACCAACC AGCATTACTG GGACATTTGG
  CAGCATACAC TGGTTTCCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46814971	NES10969925	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33446252					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46814971	NES10969925	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9304241 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Tssr160519	transcription start site region 160519	1357 bp downstream
Tssr160520	transcription start site region 160520	1293 bp downstream
Tssr160521	transcription start site region 160521	1239 bp downstream
Tssr160522	transcription start site region 160522	1122 bp downstream
Tssr162876	transcription start site region 162876	1919 bp upstream
Tssr162877	transcription start site region 162877	1900 bp upstream
Tssr162878	transcription start site region 162878	1848 bp upstream
Tssr162879	transcription start site region 162879	1742 bp upstream
Tssr162880	transcription start site region 162880	1656 bp upstream
Tssr162881	transcription start site region 162881	1638 bp upstream
Tssr162882	transcription start site region 162882	1338 bp upstream
Tssr162883	transcription start site region 162883	948 bp upstream
Tssr162884	transcription start site region 162884	883 bp upstream
Tssr162885	transcription start site region 162885	847 bp upstream
Tssr162886	transcription start site region 162886	827 bp upstream
Tssr162887	transcription start site region 162887	789 bp upstream
Tssr162888	transcription start site region 162888	735 bp upstream
Tssr162889	transcription start site region 162889	717 bp upstream
Tssr162890	transcription start site region 162890	647 bp upstream
Tssr162891	transcription start site region 162891	619 bp upstream
Tssr162892	transcription start site region 162892	564 bp upstream
Tssr162893	transcription start site region 162893	459 bp upstream
Tssr162894	transcription start site region 162894	423 bp upstream
Tssr162895	transcription start site region 162895	367 bp upstream
Tssr162896	transcription start site region 162896	340 bp upstream
Tssr162897	transcription start site region 162897	309 bp upstream
Tssr162898	transcription start site region 162898	289 bp upstream
Tssr162899	transcription start site region 162899	149 bp upstream
Tssr162900	transcription start site region 162900	131 bp upstream
Tssr162901	transcription start site region 162901	102 bp upstream
Tssr162902	transcription start site region 162902	19 bp upstream
Tssr162903	transcription start site region 162903	30 bp downstream
Tssr162904	transcription start site region 162904	131 bp downstream
Tssr162905	transcription start site region 162905	215 bp downstream
Tssr162906	transcription start site region 162906	219 bp downstream
Tssr162907	transcription start site region 162907	292 bp downstream
Tssr162908	transcription start site region 162908	316 bp downstream
Tssr162909	transcription start site region 162909	1921 bp downstream
Tssr162910	transcription start site region 162910	1946 bp downstream
Tssr162911	transcription start site region 162911	2000 bp downstream