rs33447003 SNP Detail

Summary

• ID
  rs33447003
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92111483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTGG GAGAAGGGAG GCAATTGTCC
  R
  GGAGGAGATG CCTTTAGCTT AGCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45779853	mCV23365913	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss321611418	CHEV_5_92392650	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33447003					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92111483 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16049	CpG island 16049	223 bp distal
Rchy1	ring finger and CHY zinc finger domain containing 1	556 bp upstream
Rr125457	regulatory region 125457	within coordinates
Rr367874	regulatory region 367874	within coordinates
Thap6	THAP domain containing 6	within coordinates
Tssr47269	transcription start site region 47269	1196 bp downstream
Tssr47270	transcription start site region 47270	1179 bp downstream
Tssr47271	transcription start site region 47271	1151 bp downstream
Tssr47272	transcription start site region 47272	714 bp downstream
Tssr47273	transcription start site region 47273	682 bp downstream
Tssr47274	transcription start site region 47274	666 bp downstream
Tssr47275	transcription start site region 47275	297 bp downstream
Tssr47276	transcription start site region 47276	265 bp downstream
Tssr51830	transcription start site region 51830	1331 bp upstream
Tssr51831	transcription start site region 51831	1300 bp upstream
Tssr51832	transcription start site region 51832	884 bp upstream
Tssr51833	transcription start site region 51833	737 bp upstream
Tssr51834	transcription start site region 51834	519 bp upstream
Tssr51835	transcription start site region 51835	487 bp upstream