rs33447254 SNP Detail

Summary

• ID
  rs33447254
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9304539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCCTTTT AGGGGGCCTG
  TGTCATTGTG ATTTCCTTTC CTCCTTCTCT CCTACAACCA ACCAGCATTA CTGGGACATT
  TGGCAGCATA CACTGGTTTC CTGGTGAAAG AGCGGAGTTA GAAGTTTTCC TTGTTGAAAA
  TGAAGTGGAC TCCACGCGGG CCGGATTCTG AGTTGGAGAT GCTCTGTTTA CTGAGAGTTT
  Y
  AGCCAAGGCT TCAGGGCCAC ACAGGAAAAC GCCTATTGTG GTGCTTTGGA GAGAGAAAAG
  AAAGTTTCAG TCAACATGAG TTGGGCAGCA GCGAGGGTAG TAAATTTCCT GTTCAGTTGA
  GGCCACTCTA TTCCTACTTT TTTCCACAAG GGACAAAAAT GTTCAATTTA CTCACAAGGA
  GCAGGCTCGA CTGAGTATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46814974	NES10969926	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33447254					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46814974	NES10969926	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9304539 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Tssr160519	transcription start site region 160519	1655 bp downstream
Tssr160520	transcription start site region 160520	1591 bp downstream
Tssr160521	transcription start site region 160521	1537 bp downstream
Tssr160522	transcription start site region 160522	1420 bp downstream
Tssr162880	transcription start site region 162880	1954 bp upstream
Tssr162881	transcription start site region 162881	1936 bp upstream
Tssr162882	transcription start site region 162882	1636 bp upstream
Tssr162883	transcription start site region 162883	1246 bp upstream
Tssr162884	transcription start site region 162884	1181 bp upstream
Tssr162885	transcription start site region 162885	1145 bp upstream
Tssr162886	transcription start site region 162886	1125 bp upstream
Tssr162887	transcription start site region 162887	1087 bp upstream
Tssr162888	transcription start site region 162888	1033 bp upstream
Tssr162889	transcription start site region 162889	1015 bp upstream
Tssr162890	transcription start site region 162890	945 bp upstream
Tssr162891	transcription start site region 162891	917 bp upstream
Tssr162892	transcription start site region 162892	862 bp upstream
Tssr162893	transcription start site region 162893	757 bp upstream
Tssr162894	transcription start site region 162894	721 bp upstream
Tssr162895	transcription start site region 162895	665 bp upstream
Tssr162896	transcription start site region 162896	638 bp upstream
Tssr162897	transcription start site region 162897	607 bp upstream
Tssr162898	transcription start site region 162898	587 bp upstream
Tssr162899	transcription start site region 162899	447 bp upstream
Tssr162900	transcription start site region 162900	429 bp upstream
Tssr162901	transcription start site region 162901	400 bp upstream
Tssr162902	transcription start site region 162902	317 bp upstream
Tssr162903	transcription start site region 162903	263 bp upstream
Tssr162904	transcription start site region 162904	156 bp upstream
Tssr162905	transcription start site region 162905	82 bp upstream
Tssr162906	transcription start site region 162906	67 bp upstream
Tssr162907	transcription start site region 162907	within coordinates
Tssr162908	transcription start site region 162908	18 bp downstream
Tssr162909	transcription start site region 162909	1623 bp downstream
Tssr162910	transcription start site region 162910	1648 bp downstream
Tssr162911	transcription start site region 162911	1702 bp downstream