rs33447256 SNP Detail

Summary

• ID
  rs33447256
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9304824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCAGCGA GGGTAGTAAA
  TTTCCTGTTC AGTTGAGGCC ACTCTATTCC TACTTTTTTC CACAAGGGAC AAAAATGTTC
  AATTTACTCA CAAGGAGCAG GCTCGACTGA GTATAGAGAC GGCTGGCAAA CTCAAATGGA
  GTTAACATCC CCAGAAAATG AAACCCAAGC AGGGGTTTGG AAATTTCTTC CACAGAGGTA
  K
  CATGGTAGTG GCTGATTTTG TGTGTCAACT TGATACAAGC TGGAGTTATC ACAGAGAAAG
  GAGCCTCCCT TGAGGAAATG CTTTCATGAG ATCCAGCTGT AAGGCATTTT CTCAACTAGT
  GATCAAGGGG GAAGGGCACA GCCCATTGTG GGTGGTGCCA TCCCTGAGCT GGTAGTCCTG
  GGTTCCATAA GAAAGCAAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46814977	NES10969927	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33447256					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46814977	NES10969927	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9304824 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Rr406085	regulatory region 406085	1962 bp upstream
Tssr160519	transcription start site region 160519	1940 bp downstream
Tssr160520	transcription start site region 160520	1876 bp downstream
Tssr160521	transcription start site region 160521	1822 bp downstream
Tssr160522	transcription start site region 160522	1705 bp downstream
Tssr162882	transcription start site region 162882	1921 bp upstream
Tssr162883	transcription start site region 162883	1531 bp upstream
Tssr162884	transcription start site region 162884	1466 bp upstream
Tssr162885	transcription start site region 162885	1430 bp upstream
Tssr162886	transcription start site region 162886	1410 bp upstream
Tssr162887	transcription start site region 162887	1372 bp upstream
Tssr162888	transcription start site region 162888	1318 bp upstream
Tssr162889	transcription start site region 162889	1300 bp upstream
Tssr162890	transcription start site region 162890	1230 bp upstream
Tssr162891	transcription start site region 162891	1202 bp upstream
Tssr162892	transcription start site region 162892	1147 bp upstream
Tssr162893	transcription start site region 162893	1042 bp upstream
Tssr162894	transcription start site region 162894	1006 bp upstream
Tssr162895	transcription start site region 162895	950 bp upstream
Tssr162896	transcription start site region 162896	923 bp upstream
Tssr162897	transcription start site region 162897	892 bp upstream
Tssr162898	transcription start site region 162898	872 bp upstream
Tssr162899	transcription start site region 162899	732 bp upstream
Tssr162900	transcription start site region 162900	714 bp upstream
Tssr162901	transcription start site region 162901	685 bp upstream
Tssr162902	transcription start site region 162902	602 bp upstream
Tssr162903	transcription start site region 162903	548 bp upstream
Tssr162904	transcription start site region 162904	441 bp upstream
Tssr162905	transcription start site region 162905	367 bp upstream
Tssr162906	transcription start site region 162906	352 bp upstream
Tssr162907	transcription start site region 162907	280 bp upstream
Tssr162908	transcription start site region 162908	249 bp upstream
Tssr162909	transcription start site region 162909	1338 bp downstream
Tssr162910	transcription start site region 162910	1363 bp downstream
Tssr162911	transcription start site region 162911	1417 bp downstream