rs33447259 SNP Detail

Summary

• ID
  rs33447259
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9305367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTGGTCAT GATGTTTGTG
  CAGGAATAGA AACCCTGACT AAGACACGTG GCTAATAAGC GAAGCTAAAG TGTACTTTTC
  CTGTTGAACT CGAGCCCCCC AAATCTTTCT AGTATTTTCA AATCAGTAAC ACACCCCTCA
  ACTCTGACAG CAGCTTCATC CTCTGAAGTC TTACAGTGGA AATCCTTGTT TTCTAAAATG
  Y
  GGTCCCATGC CATCTTAAAA AGCTTCATGT TTTTAGTAAT GCAGGTTTCT GGGCCCCACC
  TCAGACCTAA TAAATGTAAT TTTATATGTC TATATGTAAT AACATAGCAA GGTAATTTAC
  GTGTTCATTA AAGTGTACAA AGCAATGATT CAAGTAAAGT AGGCATATCA GACCTGGGGC
  CAATGGGCCA CATACATCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46814980	NES10969882	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33447259					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46814980	NES10969882	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9305367 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Rr406085	regulatory region 406085	1419 bp upstream
Tssr162885	transcription start site region 162885	1973 bp upstream
Tssr162886	transcription start site region 162886	1953 bp upstream
Tssr162887	transcription start site region 162887	1915 bp upstream
Tssr162888	transcription start site region 162888	1861 bp upstream
Tssr162889	transcription start site region 162889	1843 bp upstream
Tssr162890	transcription start site region 162890	1773 bp upstream
Tssr162891	transcription start site region 162891	1745 bp upstream
Tssr162892	transcription start site region 162892	1690 bp upstream
Tssr162893	transcription start site region 162893	1585 bp upstream
Tssr162894	transcription start site region 162894	1549 bp upstream
Tssr162895	transcription start site region 162895	1493 bp upstream
Tssr162896	transcription start site region 162896	1466 bp upstream
Tssr162897	transcription start site region 162897	1435 bp upstream
Tssr162898	transcription start site region 162898	1415 bp upstream
Tssr162899	transcription start site region 162899	1275 bp upstream
Tssr162900	transcription start site region 162900	1257 bp upstream
Tssr162901	transcription start site region 162901	1228 bp upstream
Tssr162902	transcription start site region 162902	1145 bp upstream
Tssr162903	transcription start site region 162903	1091 bp upstream
Tssr162904	transcription start site region 162904	984 bp upstream
Tssr162905	transcription start site region 162905	910 bp upstream
Tssr162906	transcription start site region 162906	895 bp upstream
Tssr162907	transcription start site region 162907	823 bp upstream
Tssr162908	transcription start site region 162908	792 bp upstream
Tssr162909	transcription start site region 162909	795 bp downstream
Tssr162910	transcription start site region 162910	820 bp downstream
Tssr162911	transcription start site region 162911	874 bp downstream