rs33447262 SNP Detail

Summary

• ID
  rs33447262
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9305776 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGCATGCA GCCCGACATA
  TTTGTTGAGC ACATCGTGTT TCAAAGACAA GTCAATGTGT TTGCCACATC TATTTGAAAA
  GATATATTTA GAGTAAGATA ATGAGTTTCT CATGTGTTCT ATGTGAGAGG GGGATTTCCT
  CAGGGTTTCA TGATGGCTAA AACTGTAGTG ACAATAGAAA GACACCATGT CATCTGTCAA
  Y
  TTATGATTTT AGACTCAGAC ACTTGATCTG AAAGTGAAGG TATAATAGTC TTAATAGTAA
  GCATAAGCTG TACTCATTAT TGAAAATCAA TATATAAAAT AGTGACATTT GGACAACTAA
  AGAAGAGAAA TGCTATGAAT TTGACAGAAT TACTCTCCAT GTGATTTTGC TATGACTTAA
  AGGTTATTTC TAAAAGTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46814983	NES10969849	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33447262					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46814983	NES10969849	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9305776 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Rr406085	regulatory region 406085	1010 bp upstream
Rr689864	regulatory region 689864	1765 bp proximal
Tssr162893	transcription start site region 162893	1994 bp upstream
Tssr162894	transcription start site region 162894	1958 bp upstream
Tssr162895	transcription start site region 162895	1902 bp upstream
Tssr162896	transcription start site region 162896	1875 bp upstream
Tssr162897	transcription start site region 162897	1844 bp upstream
Tssr162898	transcription start site region 162898	1824 bp upstream
Tssr162899	transcription start site region 162899	1684 bp upstream
Tssr162900	transcription start site region 162900	1666 bp upstream
Tssr162901	transcription start site region 162901	1637 bp upstream
Tssr162902	transcription start site region 162902	1554 bp upstream
Tssr162903	transcription start site region 162903	1500 bp upstream
Tssr162904	transcription start site region 162904	1393 bp upstream
Tssr162905	transcription start site region 162905	1319 bp upstream
Tssr162906	transcription start site region 162906	1304 bp upstream
Tssr162907	transcription start site region 162907	1232 bp upstream
Tssr162908	transcription start site region 162908	1201 bp upstream
Tssr162909	transcription start site region 162909	386 bp downstream
Tssr162910	transcription start site region 162910	411 bp downstream
Tssr162911	transcription start site region 162911	465 bp downstream