rs33447735 SNP Detail

Summary

• ID
  rs33447735
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:38720751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAG ACACTTTCCC TGGGTCTGGT
  Y
  GAGCACTGTC CTAGGGATGT GCTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45780210	mCV22716485	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss148266964	ENSMUSSNP955128	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss321518866	CHEV_5_38954647	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33447735					SNP	C	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:38720751 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15817	CpG island 15817	1225 bp distal
Gm57313	predicted gene, 57313	1267 bp downstream
Gm72219	predicted gene, 72219	within coordinates
Rr399063	regulatory region 399063	1429 bp downstream
Tssr46063	transcription start site region 46063	1483 bp downstream
Tssr50814	transcription start site region 50814	1786 bp upstream
Tssr50815	transcription start site region 50815	1768 bp upstream
Tssr50816	transcription start site region 50816	1728 bp upstream
Tssr50817	transcription start site region 50817	1676 bp upstream
Tssr50818	transcription start site region 50818	1616 bp upstream
Tssr50819	transcription start site region 50819	174 bp upstream
Tssr50820	transcription start site region 50820	156 bp upstream
Wdr1	WD repeat domain 1	486 bp upstream