rs33448174 SNP Detail

Summary

• ID
  rs33448174
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9306019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATAGTCTT AATAGTAAGC
  ATAAGCTGTA CTCATTATTG AAAATCAATA TATAAAATAG TGACATTTGG ACAACTAAAG
  AAGAGAAATG CTATGAATTT GACAGAATTA CTCTCCATGT GATTTTGCTA TGACTTAAAG
  GTTATTTCTA AAAGTCAGAG CTATCAGACA TCTGTTGGAT AAGAATTCAA CCCCATCACA
  R
  CAATATGGAA ATGTTAATGG TAACTTTTAG ACTACAAAGT ACAGTCAGTG CTCGGGAACT
  GCTGCTTTAG GCAGACCACA AGCTTCAAGA ACACTTGAAA GGAGGACTTC TTACTTAGGG
  TGTTCACTTG CAATGGTCTT GAACTCGTTA TCCCAGTTGG GCCGTCCATA CAGAGTCTTC
  TGTTTTAGGC CTGTGATCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46814986	NES10969850	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33448174					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46814986	NES10969850	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9306019 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Rr406085	regulatory region 406085	767 bp upstream
Rr689864	regulatory region 689864	1522 bp proximal
Tssr162899	transcription start site region 162899	1927 bp upstream
Tssr162900	transcription start site region 162900	1909 bp upstream
Tssr162901	transcription start site region 162901	1880 bp upstream
Tssr162902	transcription start site region 162902	1797 bp upstream
Tssr162903	transcription start site region 162903	1743 bp upstream
Tssr162904	transcription start site region 162904	1636 bp upstream
Tssr162905	transcription start site region 162905	1562 bp upstream
Tssr162906	transcription start site region 162906	1547 bp upstream
Tssr162907	transcription start site region 162907	1475 bp upstream
Tssr162908	transcription start site region 162908	1444 bp upstream
Tssr162909	transcription start site region 162909	143 bp downstream
Tssr162910	transcription start site region 162910	168 bp downstream
Tssr162911	transcription start site region 162911	222 bp downstream