rs33449299 SNP Detail

Summary

• ID
  rs33449299
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9306835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGTAACG GAATTATAAC
  ACAAACTAAG ATGAAATGAC AAAATGAGAA GAAGAACTGT CCCCAGAATG AGATGTGCTT
  TTTGTATACA CCAAAAGCTT GGCTCCTAGA GGCAGGTGCC TACAGGACCT TCACTGCTGG
  GCCAGTTAGT GTAGGCAGTG GATTAGAACA TTTAAGAGGA GATGATTTCA AGGCTGTGAC
  R
  GGAAATTGCC AACTGCTTGT AGCTCATTTT CAAGAGTTGG CCTTCCGTTA CTGGATCAAA
  AGGCAATCAG CCCCAGCCTC TAGGTAAATG ATCCAGCCAT GCAGCTGCCT GTGACTCCTG
  GCAGGGTTCA AGATGAATCA GTGGGCAGGG CTTTGAACAC CTACGTAGTC AAAGGGAAAC
  TGATGACAGT CAGTCAATGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46815007	NES10969857	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33449299					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46815007	NES10969857	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9306835 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Rr406085	regulatory region 406085	within coordinates
Rr689864	regulatory region 689864	706 bp proximal
Tssr160523	transcription start site region 160523	1950 bp upstream
Tssr162909	transcription start site region 162909	650 bp upstream
Tssr162910	transcription start site region 162910	603 bp upstream
Tssr162911	transcription start site region 162911	565 bp upstream