rs33449302 SNP Detail

Summary

• ID
  rs33449302
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:9306897 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGAATGAG ATGTGCTTTT
  TGTATACACC AAAAGCTTGG CTCCTAGAGG CAGGTGCCTA CAGGACCTTC ACTGCTGGGC
  CAGTTAGTGT AGGCAGTGGA TTAGAACATT TAAGAGGAGA TGATTTCAAG GCTGTGACAG
  GAAATTGCCA ACTGCTTGTA GCTCATTTTC AAGAGTTGGC CTTCCGTTAC TGGATCAAAA
  R
  GCAATCAGCC CCAGCCTCTA GGTAAATGAT CCAGCCATGC AGCTGCCTGT GACTCCTGGC
  AGGGTTCAAG ATGAATCAGT GGGCAGGGCT TTGAACACCT ACGTAGTCAA AGGGAAACTG
  ATGACAGTCA GTCAATGAAC TCTTCTTTCC TAGTCCTAAG CTCACAAAAC TAAGAGGTAA
  ACCGATGGTC ATAAATACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46815010	NES10969858	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33449302					SNP	G	G	G	G	G	G	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46815010	NES10969858	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:9306897 () rs orientation: forward

Symbol	Name	Function Class
Cybb	cytochrome b-245, beta polypeptide	within coordinates
Rr406085	regulatory region 406085	within coordinates
Rr689864	regulatory region 689864	644 bp proximal
Tssr160523	transcription start site region 160523	1888 bp upstream
Tssr162909	transcription start site region 162909	712 bp upstream
Tssr162910	transcription start site region 162910	665 bp upstream
Tssr162911	transcription start site region 162911	627 bp upstream
Tssr162912	transcription start site region 162912	1949 bp downstream