rs33449373 SNP Detail

Summary

• ID
  rs33449373
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:40160252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTTG AAGGTATGGA TGTGTCATGT
  S
  AAGCAACTGT GCCTTGGGAC TATGA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	LG/J	SM/J
ss39536716	mCV24450424	ABI	CRAMUS_MOUSE	f	SNP	C	G
ss325385460	CHEV_17_39986306	CHEVERUD	SCREENING_POP	f	SNP			C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	LG/J	SM/J
rs33449373					SNP	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:40160252 () rs orientation: forward

Symbol	Name	Function Class
AY036118	cDNA sequence AY036118	within coordinates
Cpgi9159	CpG island 9159	530 bp distal
Gm26917	predicted gene, 26917	573 bp downstream
Rn18s	18S ribosomal RNA	1160 bp distal
Rn18s-rs5	18s RNA, related sequence 5	1159 bp downstream
Tssr144612	transcription start site region 144612	1913 bp downstream
Tssr144613	transcription start site region 144613	1769 bp downstream
Tssr144614	transcription start site region 144614	1747 bp downstream
Tssr144615	transcription start site region 144615	1666 bp downstream
Tssr144616	transcription start site region 144616	1576 bp downstream
Tssr144617	transcription start site region 144617	1549 bp downstream
Tssr144618	transcription start site region 144618	1532 bp downstream
Tssr144619	transcription start site region 144619	1489 bp downstream
Tssr144620	transcription start site region 144620	1466 bp downstream
Tssr144621	transcription start site region 144621	1352 bp downstream
Tssr144622	transcription start site region 144622	1336 bp downstream
Tssr144623	transcription start site region 144623	1306 bp downstream
Tssr144624	transcription start site region 144624	1171 bp downstream
Tssr144625	transcription start site region 144625	1154 bp downstream
Tssr144626	transcription start site region 144626	1125 bp downstream
Tssr144627	transcription start site region 144627	1093 bp downstream
Tssr144628	transcription start site region 144628	934 bp downstream
Tssr144629	transcription start site region 144629	860 bp downstream
Tssr144630	transcription start site region 144630	851 bp downstream
Tssr144631	transcription start site region 144631	754 bp downstream
Tssr144632	transcription start site region 144632	644 bp downstream
Tssr144633	transcription start site region 144633	597 bp downstream
Tssr148065	transcription start site region 148065	1577 bp upstream
Tssr148066	transcription start site region 148066	1500 bp upstream
Tssr148067	transcription start site region 148067	1400 bp upstream
Tssr148068	transcription start site region 148068	1302 bp upstream
Tssr148069	transcription start site region 148069	1119 bp upstream
Tssr148070	transcription start site region 148070	1055 bp upstream
Tssr148071	transcription start site region 148071	1029 bp upstream
Tssr148072	transcription start site region 148072	701 bp upstream