rs33450542 SNP Detail

Summary

• ID
  rs33450542
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:120087156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAATAC AACTAACTAA
  CTAACTAACT AACCAACTAA CTAACTAACT AACTAAGAAG AGCAGCTTGT GCTTGTAACC
  ACCAAGCCAA CCACTAACCA CTCTTCAGCC CTCTTTTCTT CTCTTTAGTG GCTGAGACTC
  AATCGTATGG ATACCCTGCA CTTTACCAGT TTGTTTGCAA GCATTGTCAC CAGTCCAAAT
  Y
  CATTTCTAAA TTTAAAAACC AAACAAACAA ACAATATTGA TTTGCTTCTG TCACAAGGCC
  TGGGATGAAC CATCCCTGGT GGTTCTAGCT ATGTCCTGTG CAGTTGCGAC CTTGGGGTCA
  CTACTTGTCC AGTGTCATGT TCATTGTTGA CTAGTTTTCT CAGACTGACC AGCTAGCTTA
  GAATAAAGAC AATGTTGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47799523	NES11999997	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T		C	T	T	C		T
ss323226205	CHEV_9_120167208	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33450542					SNP	T	T	T	T	C	T	T	T	T	T	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47799523	NES11999997	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:120087156 () rs orientation: forward

Symbol	Name	Function Class
Gm38642	predicted gene, 38642	1044 bp downstream
Gm47059	predicted gene, 47059	within coordinates
Rr207892	regulatory region 207892	1246 bp proximal