rs33450594 SNP Detail

Summary

• ID
  rs33450594
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:31204299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ATAGACAAGG AGGGTGACAC ACACCTTTAA TCCTTCTGGA GGCGGACGGA GAGGAATCTC
  TAGAGTTCAA GGCCTACCTT GTCTACAAAG TGAATACCAG GACAGCCATA TCTGTAGAAA
  TACGGTCTTG AAAAAACAAA ACAAGCCGGG CATGGTGGCA CACGCCTTTA ATCCCAGCAC
  TTGGGAGGCA GAGGAAGGCG AATTTCTGAG TTCGAGGCCA GCCTGGTCTA CAGAGTGAGT
  TCCAGGACAG CCAGGGCTAC ACGGAGAAAC CCTGTCTCAA AAACAAAAAC AAAACAAAAA
  M
  TAAGAAAAAA CCCTTCTAGA CCAATCCTAG CACACAGGGG GCAGACAGGT GGATCTCTAT
  GAGTTCCAGG CCAACCAAAG CTACACGGTC TCAAAATAAA ACACCAAGTG GTCGGGTAGT
  ACCGATTTGG TTCCTCTGCT TCTAGAGTTT CCTGATTAAT TATCTGCGTT GAGAAACCAC
  GAAGCCTCTG GGATAGAGGA AGAAGAGGTA AGCAGACAGG AAAACGCCAA GCCAGCAGTA
  ACACAACTTT CATACGATCC AATTCTAGGA AAAGAACAGT GGCTTTCTAC AAACTCCACT
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J
ss45780519	mCV22340591	ABI	CRAMUS_MOUSE	f	SNP	A	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J
rs33450594					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:31204299 () rs orientation: forward

Symbol	Name	Function Class
Atraid	all-trans retinoic acid induced differentiation factor	1685 bp upstream
Cpgi15696	CpG island 15696	780 bp proximal
D5Jcs306	DNA segment, Chr 5, John C. Schimenti 306	679 bp distal
Rr125009	regulatory region 125009	301 bp proximal
Rr399020	regulatory region 399020	1499 bp upstream
Slc5a6	solute carrier family 5 (sodium-dependent vitamin transporter), member 6	within coordinates
Tssr45658	transcription start site region 45658	1672 bp upstream
Tssr50520	transcription start site region 50520	903 bp downstream
Tssr50521	transcription start site region 50521	924 bp downstream
Tssr50522	transcription start site region 50522	1043 bp downstream
Tssr50523	transcription start site region 50523	1059 bp downstream
Tssr50524	transcription start site region 50524	1281 bp downstream