rs33450714 SNP Detail

Summary

• ID
  rs33450714
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34612055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTATCAATA TTATAAGAGA ATCCTTATTT TAAAATGCTT
  ACTTTATTAT GGAGGTGTGT GTCTGTCTGT GTGTCGATGA GGTAACTATG GGCTGGAGGT
  R
  CAGGCTTTTG TGAGCTGCTG GGTAGGGATG CTCGGATCTT GGATCTGAGC TCATCTCTTC
  TGTTAACTGC TGAGCCATCT CTCCAGCCCA TAAAATTAC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	LG/J	SM/J
ss46277885	mCV22853964	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss149094917	ENSMUSSNP4261751	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss322575450	CHEV_8_35207955	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	LG/J	SM/J
rs33450714					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34612055 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20243	CpG island 20243	1390 bp proximal
Leprotl1	leptin receptor overlapping transcript-like 1	within coordinates
Rr661961	regulatory region 661961	1974 bp distal
Rr661962	regulatory region 661962	86 bp proximal
Rr661963	regulatory region 661963	936 bp proximal
Tssr76861	transcription start site region 76861	343 bp upstream
Tssr76862	transcription start site region 76862	1424 bp upstream
Tssr76863	transcription start site region 76863	1459 bp upstream
Tssr76864	transcription start site region 76864	1474 bp upstream
Tssr80896	transcription start site region 80896	1246 bp downstream
Tssr80897	transcription start site region 80897	1680 bp downstream
Tssr80898	transcription start site region 80898	1816 bp downstream
Tssr80899	transcription start site region 80899	1831 bp downstream
Tssr80900	transcription start site region 80900	1852 bp downstream
Tssr80901	transcription start site region 80901	1873 bp downstream