rs33451215 SNP Detail

Summary

• ID
  rs33451215
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130042277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTCTTAT CATCACCATT
  AATTATGCTT CGATAGCAAA TACTTTTATT CCTTACTGCT TTTGTGGTAT TGGAAGTAAA
  CAGAAATCAA TGCCTGTGGT CACTGACTCT CACTAGCCAG AAGTCTTATT TCTCTTTCTC
  AGTGAAAGAA AAGAATATCA GCTCAGTTTG GGCAGTCAAG AAAGACTTTC TAGCTTTTGA
  W
  GTTTGTCCTA GGAAAAACTC TGAAAACATT CTATGGACCC TCTTTCTCCT ACTGACTCCT
  AACTCAGAAG AAATGGCCTC CCTCTGCTGG AGTCCATACA CTTTCTGTCT ACCCACCAGG
  TGTTGTTATC CTCCTATATG ATATGTTTAG ATTTTTATCA CTTCAACTCA TATGGCTTGT
  TTAATCTCAA CATCATTTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49486974	NES12869424	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33451215					SNP	T	T	T	T	T	T	A	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49486974	NES12869424	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130042277 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr417893	regulatory region 417893			683 bp distal
Thsd7b	thrombospondin, type I, domain containing 7B			Intron
				Noncoding-Transcript-Variant