rs33451221 SNP Detail

Summary

• ID
  rs33451221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130041956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTACATA CATTTTCAAA
  GATGCTCTAG TGTTTCACCC CATCTTTACC CCAATGACCC TTCCCCAAAT ACTTGGTACT
  ACAAATGTTG GAATTATCTG TGGGATGCTT CTGTAATATA TATGTAGTTA TTTTCATTTT
  TGTCATTTGA AGACTTAACT GTGTGATATG AGGCATCTCA TTTGTCACAA AGATCTGGTA
  Y
  CATGATCCCA GTAGTTGGAA AATATGTCTT CCCACATCCT GTTACTTTGA ACACTGTTTG
  TTCACTAGGG TCCATAAGAG TGGAAAGGAG AGAAGAGGAA GGTGTGACTA CAACAGAAAA
  TTATTCTTAT CATCACCATT AATTATGCTT CGATAGCAAA TACTTTTATT CCTTACTGCT
  TTTGTGGTAT TGGAAGTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49486980	NES12869420	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33451221					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49486980	NES12869420	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130041956 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr417893	regulatory region 417893			362 bp distal
Thsd7b	thrombospondin, type I, domain containing 7B			Intron
				Noncoding-Transcript-Variant