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rs33451223 SNP Detail
Summary
  • ID
    rs33451223
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr1:130041916 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATTGTGTGCA CTGCAAGAGG
    GCATGTAGGG GTCTCAACAC CTCTTACATA CATTTTCAAA GATGCTCTAG TGTTTCACCC
    CATCTTTACC CCAATGACCC TTCCCCAAAT ACTTGGTACT ACAAATGTTG GAATTATCTG
    TGGGATGCTT CTGTAATATA TATGTAGTTA TTTTCATTTT TGTCATTTGA AGACTTAACT
    R
    TGTGATATGA GGCATCTCAT TTGTCACAAA GATCTGGTAC CATGATCCCA GTAGTTGGAA
    AATATGTCTT CCCACATCCT GTTACTTTGA ACACTGTTTG TTCACTAGGG TCCATAAGAG
    TGGAAAGGAG AGAAGAGGAA GGTGTGACTA CAACAGAAAA TTATTCTTAT CATCACCATT
    AATTATGCTT CGATAGCAAA                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
ss49486982 NES12869419 PERLEGEN MM_PANEL2 f SNP G G G G G G A G G G A G G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
WSB/EiJ
rs33451223 SNP G G G G G G A G G G A G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss49486982 NES12869419 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:130041916 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr417893 regulatory region 417893 322 bp distal
Thsd7b thrombospondin, type I, domain containing 7B Intron
Noncoding-Transcript-Variant

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory