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rs33452017 SNP Detail
Summary
  • ID
    rs33452017
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr1:130041579 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAAATGGTAG AGGGGGGGCA
    AGAATAGCAT CTGAAGCCTG AAAAACACAG ATGTGGCCCT AGGATTGCAT CTCTGTCCAC
    CCCTGGTATC TGCACTCAGC CTCCAGGAAG CCTGTGTTGG ATATATCTAT GCTATGCAGT
    TGTAAAACAA TATCTTTCCA CTGATTAAGC TACTAAATTA GTGGTGATGT TATTTTCAGT
    R
    GGTAGACATC TACTGAAATT CCTGTAGATG TATAAAACCT TCATTGTGCT GAAAGTTCTC
    TAATCCAGGA GCATTTGTGA AACTTCTCCA GATATTAAAC CTTCAGTTAC TTGCAGGGAG
    AAGAAACAAT CACTAGATTG TGTGCACTGC AAGAGGGCAT GTAGGGGTCT CAACACCTCT
    TACATACATT TTCAAAGATG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
SM/J
WSB/EiJ
ss49486986 NES12869558 PERLEGEN MM_PANEL2 f SNP A A A A G A A A A A A G G G
ss145472976 ENSMUSSNP3467619 ENSEMBL ENSEMBL_Sanger f SNP A A A
ss319970937 CHEV_1_132010419 CHEVERUD SCREENING_POP f SNP G G
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
129X1/SvJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
LG/J
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
SM/J
WSB/EiJ
rs33452017 SNP A A A A A G A A A A A G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss49486986 NES12869558 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:130041579 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr417893 regulatory region 417893 within coordinates
Thsd7b thrombospondin, type I, domain containing 7B Intron
Noncoding-Transcript-Variant

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory