AAAATGGTAG AGGGGGGGCA AGAATAGCAT CTGAAGCCTG AAAAACACAG ATGTGGCCCT AGGATTGCAT CTCTGTCCAC CCCTGGTATC TGCACTCAGC CTCCAGGAAG CCTGTGTTGG ATATATCTAT GCTATGCAGT TGTAAAACAA TATCTTTCCA CTGATTAAGC TACTAAATTA GTGGTGATGT TATTTTCAGT R GGTAGACATC TACTGAAATT CCTGTAGATG TATAAAACCT TCATTGTGCT GAAAGTTCTC TAATCCAGGA GCATTTGTGA AACTTCTCCA GATATTAAAC CTTCAGTTAC TTGCAGGGAG AAGAAACAAT CACTAGATTG TGTGCACTGC AAGAGGGCAT GTAGGGGTCT CAACACCTCT TACATACATT TTCAAAGATG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss49486986 | NES12869558 | PERLEGEN | MM_PANEL2 | f | SNP | A | A | A | A | G | A | A | A | A | A | A | G | G | G | |||
ss145472976 | ENSMUSSNP3467619 | ENSEMBL | ENSEMBL_Sanger | f | SNP | A | A | A | ||||||||||||||
ss319970937 | CHEV_1_132010419 | CHEVERUD | SCREENING_POP | f | SNP | G | G | |||||||||||||||
SNP Consensus Information | ||||||||||||||||||||||
SNP | Consensus Type | 129S1/SvImJ |
129X1/SvJ |
A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
CAST/EiJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
NOD/ShiLtJ |
NZW/LacJ |
SM/J |
WSB/EiJ |
||||
rs33452017 | SNP | A | A | A | A | A | G | A | A | A | A | A | G | A | G | G | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss49486986 | NES12869558 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr1:130041579 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Rr417893 | regulatory region 417893 | within coordinates | ||||||
Thsd7b | thrombospondin, type I, domain containing 7B | Intron | ||||||
Noncoding-Transcript-Variant |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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