rs33452023 SNP Detail

Summary

• ID
  rs33452023
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:130040065 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGAATAA AACCTAAGTG
  GGTTTGGAGT TGCAGGGACC CTGTTTTAGA GAAGCTGGTC AACAGAGTGG AATTCAGGCA
  GGAACCTGAA TAAAATGAGA AAACTGCTTG GATATAAAGG AGAATCCCCA GGGGAAGTAG
  CATATATGAC AGATGTTCCC TAACTTGATG GGGGGAATAA CCAGATGTCC CTTGTGGCTC
  R
  TCCTGGCATG AAAACCATGT TGTGTTTTCA AAGAAGGCAA AGGTGGGATA TTATTCCAAC
  TGCAGCATGG AGCCATAAAG CTATGGAAGG TTTGGGATGT AGGAGTGGTT CCATTTATAC
  TTCTCCAAAA GAAGCTACAC TGGAGTGGTA CAGATAGATG CTGAAGGGCA GAGAAATTTA
  GATGCAAAGA TGTAGGTTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49486992	NES12869594	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33452023					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49486992	NES12869594	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130040065 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr417893	regulatory region 417893			335 bp proximal
Thsd7b	thrombospondin, type I, domain containing 7B			Intron
				Noncoding-Transcript-Variant