rs33453416 SNP Detail

Summary

• ID
  rs33453416
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:130093567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTTTCTTG GGGCCAGCTG CTTCCCATAT
  CCTAGGCAAT GAACATAGGA TAGTTAGAGT CTTGAAAGGT TGCAGTTTAT CAGCTAGTGA
  ATATCAGAAA CTTAGAATAA AAACCTAGGA CAAAATCTTG GCATCATGGC TAGTCAACAA
  K
  TAGAGGAGGA ATCAGGGATC AGGTAACTGA AGAAGACATT AAGATCTGAA TCTCACAACT
  CACCAATCCT CGGAAGTTGT TTTCTAGAAG TGCATTATGC TTCTTTCTAG GCTGTACAAA
  TGGGAAGAGT TGGGTTATCC ACTCTTAGTG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	SM/J	WSB/EiJ
ss49486498	NES12866606	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T			G
ss319971100	CHEV_1_132062407	CHEVERUD	SCREENING_POP	f	SNP									G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	SM/J	WSB/EiJ
rs33453416					SNP	T	T	T	T	T	T	T	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49486498	NES12866606	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:130093567 () rs orientation: forward

Symbol	Name	Function Class
Thsd7b	thrombospondin, type I, domain containing 7B	within coordinates
Tssr8552	transcription start site region 8552	1996 bp downstream
Tssr8553	transcription start site region 8553	1963 bp downstream