rs33453474 SNP Detail

Summary

• ID
  rs33453474
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:87956548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTGTATT TCTGGCTGTC
  CTGGAACTCA CTCTGTAGAC CAGGCTGGCC TCAAACTCAG AAATCCACCT GCCTCTGCCT
  CCCAAGTGCT GGGATTAAAG GCATGTGCCA CCACTGCCCG GCTTAGTAGA ATCCTATCTT
  AAAACAGCAA CAACCCCTTC CCTCAATATA AGATTGGTAG TAAGTAGGTA CAGATGGCTT
  R
  TAGGAGAGGA TCTTCAGCGG GCAAATAAAC ACACAGAAGT CTAATTGTCA AATAGAAACC
  CAAGTAGAAG CTCGGGGAAG ACGCTTGGCT GAGTGTGAAC ACTTTCAATC CCCGTGCTCA
  AGGAGAGAGA GGATAGCTCG GGCCCACCTG GTTTCCATAG TGAGTTCCAG GCCAGCTAGG
  GCTATGTATG CAAGGAGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39537695	mCV25184140	ABI	CRAMUS_MOUSE	f	SNP	G	A	A					A
ss60290181	NES15780233	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	A	A		A	A	A	A	A	A	A	A	G
ss146182866	ENSMUSSNP7059817	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33453474					SNP	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60290181	NES15780233	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:87956548 () rs orientation: forward

Symbol	Name	Function Class
Epcam	epithelial cell adhesion molecule	within coordinates
Tssr146205	transcription start site region 146205	1604 bp downstream
Tssr146206	transcription start site region 146206	775 bp downstream
Tssr146207	transcription start site region 146207	1312 bp upstream
Tssr146208	transcription start site region 146208	1332 bp upstream
Tssr146209	transcription start site region 146209	1371 bp upstream
Tssr146210	transcription start site region 146210	1445 bp upstream
Tssr146211	transcription start site region 146211	1702 bp upstream