rs33453890 SNP Detail

Summary

• ID
  rs33453890
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129144475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGGC TTGAGTATTG TGGCTCCTAG
  Y
  TTTTGGCTTC GTGTGAACCA GTGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45280225	mCV23184317	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	T
ss147586261	ENSMUSSNP4585320	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
ss320504790	CHEV_2_129128291	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33453890					SNP	C	C	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129144475 () rs orientation: forward

Symbol	Name	Function Class
Gm14023	predicted gene 14023	within coordinates
Il1a	interleukin 1 alpha	within coordinates
Rr564905	regulatory region 564905	1994 bp distal
Tssr26208	transcription start site region 26208	1987 bp upstream
Tssr26209	transcription start site region 26209	1906 bp upstream
Tssr26210	transcription start site region 26210	1789 bp upstream
Tssr26211	transcription start site region 26211	1652 bp upstream
Tssr26212	transcription start site region 26212	1609 bp upstream
Tssr26213	transcription start site region 26213	1006 bp upstream
Tssr26214	transcription start site region 26214	400 bp downstream
Tssr26215	transcription start site region 26215	423 bp downstream
Tssr26216	transcription start site region 26216	1209 bp downstream
Tssr26217	transcription start site region 26217	1239 bp downstream