rs33454682 SNP Detail

Summary

• ID
  rs33454682
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:14236511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATTTGACG AAATAAATAA
  AACATTTGAA ACTGATGTCT TCAATTGTTG CTTCTAAGAC AGGCTATAAA CATGTGCCTC
  TCCTTTGTGT ATTTCTCTCT TTCTGGTTGT GTTATAGTTT TTGCTAATGG GGAGTTGGTG
  CATGTAAATA AAACAGCTCT GGTTGGTGGT TAGCATAGGA CATAGCTCAT AGCTTTCCAT
  Y
  CCATTTGCAG TGACCTGAAA ACAAAAATGG CAGTACTGTC ACAAAAATGG TCTTGCTGGT
  ATATGTAAGG GCAAATTTCT ATCTTAATTT CTACCTGAAA ATTTATGATG CATTAGAGTT
  TCTTCCAAGA AAACCATTAC AGGAAATATC AGAGCATTGT TTTTGTTTTC TGTTTGGGTT
  TTTTTTTTTT TATTTACTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss47800006	NES11703329	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T		C	T	T		T
ss321749960	CHEV_6_14186512	CHEVERUD	SCREENING_POP	f	SNP									C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33454682					SNP	T	T	T	T	C	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47800006	NES11703329	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:14236511 () rs orientation: forward

Symbol	Name	Function Class
Gm67285	predicted gene, 67285	within coordinates
Rr378968	regulatory region 378968	295 bp upstream