rs33454874 SNP Detail

Summary

• ID
  rs33454874
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84492175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAAGCTTT TTGTTTCCAG GACAATTATT TTTGGGAGGG
  TATGAGGTTT TATTGGTAGT AGTGTTTATT TTGTTGAGAT AGGGTCTCAC TATGTAGCCC
  W
  GGTGACCTAG AACTTGCTTT GTAAGCCAGG CTGGCCTCAG GCTCAGGGAT TTGAAACTTG
  ACTCTGCTTT CCTAGGGCTA GGATTAAAGG CTTTCTTTT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45280885	mCV22809165	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	A
ss146833677	ENSMUSSNP7229980	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		A
ss320371856	CHEV_2_84501988	CHEVERUD	SCREENING_POP	f	SNP					T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33454874					SNP	T	A	T	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84492175 () rs orientation: forward

Symbol	Name	Function Class
Btbd18	BTB domain containing 18	Intron
Gm28635	predicted gene 28635	Intron
Rr560295	regulatory region 560295	1220 bp distal
Rr560296	regulatory region 560296	1345 bp distal
Rr560297	regulatory region 560297	1210 bp distal
Rr560298	regulatory region 560298	1137 bp proximal
Rr560299	regulatory region 560299	1238 bp proximal