rs33454878 SNP Detail

Summary

• ID
  rs33454878
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118714111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGCG GTGACTTTCT GGACGCTCCA
  S
  TTTCCCACTC GTGCTCTGGA TGCAC                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45280892	mCV22801936	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	G	C
ss147316246	ENSMUSSNP4279783	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss320472451	CHEV_2_118709366	CHEVERUD	SCREENING_POP	f	SNP						G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33454878					SNP	C	C	C	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118714111 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12096	CpG island 12096	within coordinates
Ivd	isovaleryl coenzyme A dehydrogenase	723 bp downstream
Rr397218	regulatory region 397218	467 bp downstream
Rr397219	regulatory region 397219	within coordinates