rs33455517 SNP Detail

Summary

• ID
  rs33455517
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:118713463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGT TAAGTGTAGC CAGGTCTTGT
  K
  CCTTATCAGA ATCTAGTGAC AAACA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45281092	mCV22801913	ABI	CRAMUS_MOUSE	f	SNP	T	T	G	T
ss147316221	ENSMUSSNP400163	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss320472446	CHEV_2_118708718	CHEVERUD	SCREENING_POP	f	SNP					G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33455517					SNP	T	T	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118713463 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12096	CpG island 12096	292 bp proximal
Ivd	isovaleryl coenzyme A dehydrogenase	75 bp downstream
Rr397218	regulatory region 397218	within coordinates
Rr397219	regulatory region 397219	554 bp upstream
Rr563358	regulatory region 563358	1665 bp distal
Rr563359	regulatory region 563359	within coordinates
Rr563360	regulatory region 563360	588 bp proximal