rs33456405 SNP Detail

Summary

• ID
  rs33456405
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:57313536 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGA CAAGGAGCCG TCCATGAACC
  M
  CACCTATGCA TGCCCGGAAG AAGAC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39537953	mCV23457652	ABI	CRAMUS_MOUSE	f	SNP	C	A	A	A
ss145809279	ENSMUSSNP2439324	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33456405					SNP	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:57313536 () rs orientation: forward

Symbol	Name	Function Class
Gtf2f1	general transcription factor IIF, polypeptide 1	within coordinates
Rr529238	regulatory region 529238	589 bp proximal
Rr529239	regulatory region 529239	761 bp proximal
Tssr148849	transcription start site region 148849	1823 bp upstream
Tssr148850	transcription start site region 148850	1708 bp upstream
Tssr148851	transcription start site region 148851	1644 bp upstream
Tssr148852	transcription start site region 148852	1067 bp upstream
Tssr148853	transcription start site region 148853	527 bp downstream