rs33456961 SNP Detail

Summary

• ID
  rs33456961
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:34575179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCTGTATAT GTATATGTAT ATCTCAAGAC ATTAATCCCA
  GGACAAAGGA GGCAACGGCA AATGAATCCC TATGCTTTTC TGTTATCCAT GCGGTCTCTT
  Y
  CCACCAACGG CTCTCACTGG TGAAGACTGT GACAGGAAAA GCCATAGTTG CCGGCCCTGG
  GCTCTCAGGC ACTGACATAA GGATGACAGC ATCAGTGTC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46278437	mCV24921857	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					T
ss60592241	NES16320140	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	T	C		C	C	T	T		T	T	T	T		C
ss149092942	ENSMUSSNP5743726	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss322575050	CHEV_8_35171079	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33456961					SNP	C	C	C	C	C	T	C	T	C	C	T	T	C	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60592241	NES16320140	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:34575179 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20241	CpG island 20241	90 bp proximal
Dctn6	dynactin 6	within coordinates
Rr400814	regulatory region 400814	321 bp upstream
Tssr80889	transcription start site region 80889	236 bp upstream
Tssr80890	transcription start site region 80890	183 bp upstream
Tssr80891	transcription start site region 80891	418 bp downstream
Tssr80892	transcription start site region 80892	486 bp downstream
Tssr80893	transcription start site region 80893	767 bp downstream