rs33457843 SNP Detail

Summary

• ID
  rs33457843
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:43670526 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATAAA ATTTTTAACT ATAATATTTT
  M
  ATTGTTAATT CATCACTGAA ATTTT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss39538116	mCV25275198	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	A
ss145668075	ENSMUSSNP2416286	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs33457843					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:43670526 () rs orientation: forward

Symbol	Name	Function Class
Adgrf5	adhesion G protein-coupled receptor F5	816 bp upstream
Rr527086	regulatory region 527086	326 bp proximal
Rr527087	regulatory region 527087	827 bp proximal
Tssr144671	transcription start site region 144671	385 bp upstream
Tssr144672	transcription start site region 144672	687 bp upstream
Tssr144673	transcription start site region 144673	728 bp upstream
Tssr144674	transcription start site region 144674	751 bp upstream
Tssr144675	transcription start site region 144675	788 bp upstream
Tssr148115	transcription start site region 148115	1716 bp downstream