rs33458279 SNP Detail

Summary

• ID
  rs33458279
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164586467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAG ATGGCCCAGC AGTCATGGAG
  M
  ATGTGTTGCT CTTGTAGAGG ACCAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45280370	mCV23594271	ABI	CRAMUS_MOUSE	f	SNP	A	A	C	A
ss148231801	ENSMUSSNP5507488	ENSEMBL	ENSEMBL_Sanger	f	SNP		A		A
ss320606891	CHEV_2_164570047	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs33458279					SNP	A	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164586467 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12667	CpG island 12667	1030 bp proximal
Dnttip1	deoxynucleotidyltransferase, terminal, interacting protein 1	1468 bp upstream
Tssr21635	transcription start site region 21635	1432 bp upstream
Tssr21636	transcription start site region 21636	1481 bp upstream
Tssr27522	transcription start site region 27522	1439 bp upstream
Tssr27523	transcription start site region 27523	1423 bp upstream
Tssr27524	transcription start site region 27524	1400 bp upstream
Tssr27525	transcription start site region 27525	1366 bp upstream
Tssr27526	transcription start site region 27526	1336 bp upstream
Tssr27527	transcription start site region 27527	1349 bp downstream
Tssr27528	transcription start site region 27528	1369 bp downstream
Wfdc3	WAP four-disulfide core domain 3	within coordinates