rs33458294 SNP Detail

Summary

• ID
  rs33458294
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:102295226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCCATATA GAAAGCATGA
  GGTTTCAGAT ATGAGAAGTG ATGCCCCAGA CCTAAGATCT AAAAGCTCCT TAATACAGGC
  AAGTTTGATG TATTTAACAA GTAAGACACC TTACATTTGC CCCCTCTCTG TTTATTGGCA
  CATGGGAGTT TCTGATCTAC AGCCAGTCAG ACTGCAATGG GCACTTAAAC CTTGGGCTTA
  Y
  GATATGAAAT GGCCACCCGT GGTTCTTAAG TGGTCATTAG TCACAGTCTC CTTCTGAGAC
  ACATCTTCCA TGCTTTACGT GTGTCTTGTC TCTCCAGCAC AGTTCCAGCA GCTGAGGGAA
  ACAGTGAGGG GCAAATCATA GCAAGGATCT TCAGAGGTGT AGCTCACTTT CCTTTTAAAC
  ATTCATTCAT TCACTAGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46816067	NES10728367	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33458294					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46816067	NES10728367	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:102295226 () rs orientation: forward

Symbol	Name	Function Class
Gm43245	predicted gene 43245	1630 bp downstream