rs33458665 SNP Detail

Summary

• ID
  rs33458665
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31895088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGCC CTTCCCGTCT TCCAAGTGGA
  R
  TGATATGGTC ATACGGTTCA GCCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39538118	mCV24384571	ABI	CRAMUS_MOUSE	f	SNP	A	A	G						A
ss60257465	NES15753608	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	G	G	G	A	G	A		G	A	A	G		G
ss145462562	ENSMUSSNP2673756	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G						A
ss325359828	CHEV_17_31813059	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33458665					SNP	A	A	G	G	A	G	G	G	A	G	A	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60257465	NES15753608	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31895088 () rs orientation: forward

Symbol	Name	Function Class
Cryaa	crystallin, alpha A	1817 bp upstream
Gm50222	predicted gene, 50222	675 bp downstream
Tssr143680	transcription start site region 143680	1810 bp upstream
Tssr147305	transcription start site region 147305	1995 bp downstream