rs33458783 SNP Detail

Summary

• ID
  rs33458783
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25102932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGACATTG GTGCACTCCT AGGAGACAAG GGCTGTGAGG
  GTCCAGCTCG CAGACCCACT CACCATGATG AGACCCGTAG CTAGGGTAAG ACCCACAAGT
  R
  GTCCAGGAAG AACGCCCAGT AAGAATGTCT TCTCTATCCA CAAAGTTACT TACCTGACAC
  TGGGACCTGT GGACAAGAGA CCTACTTTCT CAAAGTCCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39537991	mCV25251472	ABI	CRAMUS_MOUSE	f	SNP	G	A	G	A
ss145368892	ENSMUSSNP2284984	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33458783					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25102932 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8747	CpG island 8747	1847 bp proximal
Igfals	insulin-like growth factor binding protein, acid labile subunit	1947 bp downstream
Nubp2	nucleotide binding protein 2	within coordinates
Rr329822	regulatory region 329822	1732 bp distal
Rr339336	regulatory region 339336	1068 bp proximal
Tssr146788	transcription start site region 146788	1901 bp downstream
Tssr146789	transcription start site region 146789	1914 bp downstream
Tssr146790	transcription start site region 146790	1942 bp downstream
Tssr146791	transcription start site region 146791	1978 bp downstream